Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTT  >  BK006934/355472‑356046
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                       
GACAGGTATATACTGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAGCAGCACTTCTTCGGCCAACTATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTC                                                                                                                                                                                                                                                                                    <  SRR13385772.24936/301‑1 (MQ=60)
                                           TTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTC                                                                                                                                                                                                                                          <  SRR13385772.519229/300‑1 (MQ=60)
                                                  TTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAAT                                                                                                                                                                                                                                  >  SRR13385772.196731/1‑301 (MQ=60)
                                                                                        GATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCTAGAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTGAGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTGTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGGTTGCCATTTAACTAAGCAGAGCTTTCCCATGT                                                                                                                                                                                            <  SRR13385772.780059/301‑1 (MQ=60)
                                                                                                              TTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCC                                                                                                                                                                      >  SRR13385772.276469/1‑301 (MQ=60)
                                                                                                                                           GCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCAAGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATAT                                                                                                                                         <  SRR13385772.280648/301‑1 (MQ=60)
                                                                                                                                                  GAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGAAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTCTTATGCAAGCATCGCTTTACTAGTGTGGATACAAAAAAGCTTTATTACACTCTCTTTCATCCTTTCAGTTGGTTTAACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGAAGAGCTTTACCATGTTCAATGCACACATGTTACTTCATTTGTGCCAGATAGTATTGTACAAAATATGTATATC                                                                                                                                  >  SRR13385772.1241880/1‑301 (MQ=60)
                                                                                                                                                           ATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGG                                                                                                                         <  SRR13385772.674832/301‑1 (MQ=60)
                                                                                                                                                                   TATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCAGCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCTGCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAG                                                                                                                  <  SRR13385772.959403/300‑1 (MQ=60)
                                                                                                                                                                      AGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTA                                                                                                              <  SRR13385772.1235978/301‑1 (MQ=60)
                                                                                                                                                                              CACTTCTTCGGCCAACAATATCACGAACATTGAGCAAGATAGTGCTATAAAAGGACAGTTGCCCTTTTTTCCCTATTATGCAAGCATCGCTATACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCACCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGCAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCACATGTTCAATGCACCCATGTTAATTCCCTTGTCCCAGATAGAATTGTACAAAATCTGACTATCCCTTTCGGGCACTGAGTCTAATAAAATC                                                                                                      >  SRR13385772.77910/1‑301 (MQ=60)
                                                                                                                                                                                 TTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTGTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTAGTGTACAAAATATGTCTATCCCTTTGGGTAATGGAGTCTAATAAAATCGTC                                                                                                   >  SRR13385772.212072/1‑301 (MQ=60)
                                                                                                                                                                                             CAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCT                                                                                       <  SRR13385772.166239/301‑1 (MQ=60)
                                                                                                                                                                                               ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTTGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTG                                                                                     >  SRR13385772.816116/1‑301 (MQ=60)
                                                                                                                                                                                               ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTACTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCACTTTGGGGAATTGAGTCTAATCAAATCGTCTTTGCCCTATCTTG                                                                                     >  SRR13385772.846326/1‑301 (MQ=60)
                                                                                                                                                                                                     cgatAATTGAGCAAGATAGTGCTATAAATGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGG                                                                               <  SRR13385772.1062513/297‑1 (MQ=60)
                                                                                                                                                                                                                    ATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACT                                                                <  SRR13385772.48335/301‑1 (MQ=60)
                                                                                                                                                                                                                                          GCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATG                                          >  SRR13385772.121481/1‑301 (MQ=60)
                                                                                                                                                                                                                                          GCCCTTTTTTGCCTAGTATGCAAGCATCGCTTTACTAGTGTGTATACAACCAAGCTTTATTACACTCTCTTTCATCCGTTCCGTGTGTTTCACGTGAGCATGTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTTTTGTACAAAATATTTCTATCCCTTTGGGGAATTGATTCTAATAAAATCGTCTTTGCCCTATCTTGTCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTAT                                           <  SRR13385772.1114851/300‑1 (MQ=60)
                                                                                                                                                                                                                                                       TATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCC                             >  SRR13385772.468270/1‑301 (MQ=60)
                                                                                                                                                                                                                                                        ATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCC                             >  SRR13385772.686078/1‑300 (MQ=60)
                                                                                                                                                                                                                                                            TGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGA                         >  SRR13385772.1034606/1‑300 (MQ=60)
                                                                                                                                                                                                                                                            TGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTATCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGA                         >  SRR13385772.1101786/1‑300 (MQ=60)
                                                                                                                                                                                                                                                               AAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTT                     <  SRR13385772.426935/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  CATCGCTTTACTATTTTGGATACAACCAAGCTGTATTACACTCTCGTTCATCCTTTCCTGTGGTTTCTCTGTATCATTTACCGTCGTAAGAATAATCTTTTTCCTTTTAACTATGCAGTGCGTTCCCATTTTCTATGCACCCATTTTAATTCCGTTGTGCCAGATAGTAGTGTACAAAATATGTCGATCCCTTTGGTTAATTGATTCTAATTATATCGTCTTTGCCCTATCTTGTCTTGGGTTCGTTCTCTCACTAGGTGTTCACATTATGTTTATGAATTACATTATCCATGAATTTACT                  <  SRR13385772.330095/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     CGCTTTACTAGTGTGGATACAACCATGCTTTATTACACTCGCTTTCATCCTTTCCGTTTGTTTCACGGGAGCATTTACCTTCGTAAGAATAATCGTTTTCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCATATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCGCTATCTTGGCTTGGGTTCGGTCTCTCATGAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGA                <  SRR13385772.990820/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                       CTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATGGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCTGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGT              >  SRR13385772.101957/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                   GGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTT  <  SRR13385772.160379/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                       
GACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTT  >  BK006934/355472‑356046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑