Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
6054 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATGAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCCTATTACTGTATATGTGACTTTACATTGTTACTTCCGCGGCTATTTGACGTTTTCTGCTTCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCGCCCAGCTCTCTGACAAAGCTCCAGAAC > BK006934/355837‑356426
|
TAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTAGCTTGGCTTGTGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCT < SRR13385772.1149067/300‑1 (MQ=60)
AACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTA < SRR13385772.95509/300‑1 (MQ=60)
CCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTT > SRR13385772.353738/1‑301 (MQ=60)
CCATGTTCAATGCACCTATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTC < SRR13385772.888689/301‑1 (MQ=60)
GCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGTGAATTGAGTCTAATAAAATCTTCTTTGCTCGATCTTGGCTTGGGTTCTGTCTCGCACTATGTGTTCACATTATGTGTATGAAGGACATTAGCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTAGCCATCAAGCGCTCCAAGCTGACATAAGTCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTT < SRR13385772.1273428/301‑1 (MQ=60)
TAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAACAAAGGCACAACAATCAATCTATCGACCTGTGAGATTTTCAATCTCAAGTTTGTGTAAT > SRR13385772.1215562/1‑299 (MQ=60)
TGTGACAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCGAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCAAAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTT < SRR13385772.461801/300‑1 (MQ=60)
CCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATT > SRR13385772.27843/1‑301 (MQ=60)
CAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTA < SRR13385772.601432/301‑1 (MQ=60)
GTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATA > SRR13385772.489844/1‑300 (MQ=60)
TCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATA > SRR13385772.938382/1‑300 (MQ=60)
TTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAAT > SRR13385772.1050506/1‑293 (MQ=60)
CGTCTTGGCCCGATCTTGGCTTGGATTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATTACATTATCCATGAATTTACTGAGTACCTGTACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTATGTATCTACTTGTTTTTATTCGAAAACAAGGCACAACAATCAAACTATCGCCCTGTGAGATTTTCAATCTAAAGTTTGTTTAATAGATAGCGGTATATTATGGAACTATAAAGGTCCTTGAAGATACATAGTGTTTCATTCTTATTACTGTATATG < SRR13385772.1158879/301‑1 (MQ=60)
GTCTCTCACTAGGTGTTCACATTATGTTTATGACTGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGATACTTCCGCGGCTAT > SRR13385772.524439/1‑301 (MQ=60)
CTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTG > SRR13385772.19435/1‑300 (MQ=60)
CACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTG < SRR13385772.1190584/298‑1 (MQ=60)
TTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCT > SRR13385772.454393/1‑301 (MQ=60)
CATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAA < SRR13385772.182867/301‑1 (MQ=60)
ACGTTTATGCTTTATCCATCAAGCGCTCGAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTAGTCGAAAGCAAGGCACAACGATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGA < SRR13385772.732756/301‑1 (MQ=60)
TCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCTCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCTCTGGGAGATGTTCAATCTCAAGTTTGTGTAATAGAGAGCGTTATATTATGGAACTATAAAGGTCCTTGAATATACATATTGTTTCAGTCTTATTACTGTATATGTGACTTGACAGTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCATGGGCGGCTTGGAGGGCAAAGTGTCAGAATAGCGGCCAGGCCGTATGACACAAAA < SRR13385772.1215591/300‑1 (MQ=60)
CTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGATTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACAAAAA > SRR13385772.700741/1‑298 (MQ=60)
TCCATCAAGCGCTCCAAGCTGACATAAATCTCACTTTGTATCTACTTTTTTTTATTCTAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTTTGTAATAGTTAGCGTTATATTATAGAACTATAAAGTTCCTTGAATATACATAGTGTTTCTTTCTTATTACTGTATATGTGACTTTATATTGCTACTTCCTCGGCTATTTGACGTTTTTTGCTCCATGTTCGGCTTGGAGTGCAATGTTTCAGAAAATCGGCCACGCCGTATGATACAAAAGAGT > SRR13385772.949091/1‑298 (MQ=60)
CATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAA < SRR13385772.97893/301‑1 (MQ=60)
GCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTGATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCGTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGA < SRR13385772.411478/301‑1 (MQ=60)
CAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATACGAAAACAAGGCACAACTGTCAATCTGTCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGACAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAA < SRR13385772.391797/301‑1 (MQ=60)
GACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATC < SRR13385772.515011/300‑1 (MQ=60)
GACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTC > SRR13385772.445870/1‑293 (MQ=60)
ACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTAGCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTGATATTATAGAACGATAAATGTTCTTGAATATACATAGTGTTTCATTCTTATTACTGGATATGTGACTTTACATGGCTACGTCCGCGTCGATTTGACGTTTTTTGCGCCAGTTGCTGCTTTGAGTGCAAAGTGTCAGAAAAGCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCC < SRR13385772.1249970/301‑1 (MQ=60)
TCTACTTTTTTTTATTCGAAAACAAGGCACAACAATCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAG < SRR13385772.350735/257‑1 (MQ=60)
CGACAACAAGGCACAACAATCAATCTATCACCCTGTTAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTAGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTTGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCT < SRR13385772.596195/300‑1 (MQ=60)
ACAAGCAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCTTATTACTGTATATGTGACTTTACATTGCTACTTCCGCGGCTATTGGACGTTTTTTGCTCCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCACCCAGCTCTCTGACAAAGCTCCAGAAC < SRR13385772.1257618/301‑1 (MQ=60)
|
TAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCCAAGCTGACATAAATCGCACTTTGTATCTACTTTTTTTTATTCGAAAACAAGGCACAACAATGAATCTATCGCCCTGTGAGATTTTCAATCTCAAGTTTGTGTAATAGATAGCGTTATATTATAGAACTATAAAGGTCCTTGAATATACATAGTGTTTCATTCCTATTACTGTATATGTGACTTTACATTGTTACTTCCGCGGCTATTTGACGTTTTCTGCTTCAGGTGCGGCTTGGAGGGCAAAGTGTCAGAAAATCGGCCAGGCCGTATGACACAAAAGAGTAGAAAACGAGATCTCAAATATCTCGAGGCCTGTCCTCTATACAACCGCCCAGCTCTCTGACAAAGCTCCAGAAC > BK006934/355837‑356426
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |