Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATAC  >  BK006934/359340‑359936
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                            
CAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATT                                                                                                                                                                                                                                                                                                          <  SRR13385772.1231081/301‑1 (MQ=60)
               AATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTTGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTTGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAA                                                                                                                                                                                                                                                                                            >  SRR13385772.493044/1‑300 (MQ=60)
                               TACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTA                                                                                                                                                                                                                                                                            <  SRR13385772.5251/300‑1 (MQ=60)
                                          TACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTACTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATT                                                                                                                                                                                                                                                                 <  SRR13385772.27088/300‑1 (MQ=60)
                                                                  CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATA                                                                                                                                                                                                                                         <  SRR13385772.775672/300‑1 (MQ=60)
                                                                  CATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTAT                                                                                                                                                                                                                                          <  SRR13385772.1165053/299‑1 (MQ=60)
                                                                                   ACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTATGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCT                                                                                                                                                                                                                        >  SRR13385772.503149/1‑300 (MQ=60)
                                                                                         CACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTTAATGTCAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTC                                                                                                                                                                                                                    <  SRR13385772.457380/298‑1 (MQ=60)
                                                                                           CGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTT                                                                                                                                                                                                                                                                                                             >  SRR13385772.105066/1‑207 (MQ=60)
                                                                                                             TATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAAATCTTTCTGGAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCATTGTTATGTTGTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTGTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAAGAGCGCTGCTACTCCAACTATATAACCCATGTTCT                                                                                                                                                                                               <  SRR13385772.806389/299‑1 (MQ=60)
                                                                                                                                                     AAATCTTTCTGTAAAACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACAT                                                                                                                                                    <  SRR13385772.545/301‑1 (MQ=60)
                                                                                                                                                       ATCTTTCTGGAAAACGTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTT                                                                                                                                                                                                                                                                                                             <  SRR13385772.1121313/147‑1 (MQ=60)
                                                                                                                                                                    ACTTCTTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTG                                                                                                                                     <  SRR13385772.224407/301‑1 (MQ=60)
                                                                                                                                                                         TTGTCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGCCTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGT                                                                                                                                 >  SRR13385772.1064829/1‑300 (MQ=60)
                                                                                                                                                                            TCCTAAAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGT                                                                                                                              <  SRR13385772.2723/300‑1 (MQ=60)
                                                                                                                                                                                 AAGAAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTGTTCGGCTTAGAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGC                                                                                                                        <  SRR13385772.1051188/301‑1 (MQ=60)
                                                                                                                                                                                    AAC‑AAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATACAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTCCTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCCGCACCTTCATAGACAGAGACATTTGCGGTACTCCTTGGGGTAGTAGCCGCGGG                                                                                                                     >  SRR13385772.511779/1‑301 (MQ=60)
                                                                                                                                                                                              TTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGG                                                                                                            >  SRR13385772.1040076/1‑301 (MQ=60)
                                                                                                                                                                                                  AATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCC                                                                                                         <  SRR13385772.649265/300‑1 (MQ=60)
                                                                                                                                                                                                                      GTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTG                                                                                    >  SRR13385772.446222/1‑301 (MQ=60)
                                                                                                                                                                                                                               AATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTACAGACGCCGTGGCTTGGATTTGACCATCAAT                                                                           >  SRR13385772.906211/1‑301 (MQ=60)
                                                                                                                                                                                                                                                          ACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTG                                                                          <  SRR13385772.516223/275‑1 (MQ=60)
                                                                                                                                                                                                                                                                                   CTTATAAAATTCTAACATGTACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAAC                        >  SRR13385772.321913/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                   CTTATAAAATTCTAACATGAACTTATTTTTTTTAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTCGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACC                       >  SRR13385772.1116744/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                     TATAAAAGTCTAACATGTACTTATGTTGGTTAAAAGTAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTTGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATAGAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGTACCTTCAGAGACAGAGACATTTGCGGTACTACTTGGGGTATTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACA                       <  SRR13385772.1059904/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        CTTATTTTTTTTAAACTGAAAATCCTATTGTCCTTAATTGTACAATTTTTACATTTGGCGGCCACATTCTAACAATAATAGAGCTGCTACTCCAACTATATAACCCCTGTTCTTGGA‑TCACCACTTCATACCAGCACCTTCATAGCCCGAGACATTTGCGGTACTACTCGGGGTAGTAGCAGCGCTAGTATCAGGTCCAGACGCCGTGGCTTGGATTTGACCATCACTGATCTGTGAACTAGCGGCACCTTGCTTTTTGCCGGGTTGCTGATCTGCACCAGCGCTTCTATTGGAACGATAC  >  SRR13385772.898317/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                            
CAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAGCAAACTCTTTCTGGAAAACTTCTTGTCCTAAAGAACAAAATCAGTGTAATGTGTAGGCCAGTGTTATGTTTTCATGAATATGACATCTGATAAGAATAAAACAACTGGTAAAATGACTGCTTTTTCGGCTTATAAAATTCTAACATGTACATATTTTTTATAAAATGAAAATACTATTGTCCTTAATTGTACAATTTTTACATTTGGAGGCCAAATTATAAAAATAATAGCGCTGCTACTCCAACTATATAACCCATGTTCTTGGATTCAAC‑CTTCATACCAGCACCTTCATAGACAGAGACATTTGCGGTACTACTTGGGGTAGTAGCAGCGGTAGTCTCAGGTCCAGACGCAGTGGCTTGGATTTGACCATCACTGATCTGTGAAATAGCGGCATCTTGCTTTTTGCCGGGTTGATGATCTGCAACAGCGCTTCTATTGGAACGATAC  >  BK006934/359340‑359936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑