Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGCGGGTGCATGTTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT  >  BK006934/383947‑384542
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                          
TGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATTGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTCGTTCGTAACTTATGGTTCATAGG                                                                                                                                                                                                                                                                                                         >  SRR13385772.534434/1‑301 (MQ=60)
TGGCGGGTGCATGCTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATTGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGTTCATAGG                                                                                                                                                                                                                                                                                                         >  SRR13385772.377711/1‑301 (MQ=60)
                                                         GGGAAGATGTGACTACAAAGGCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTT                                                                                                                                                                                                                                                <  SRR13385772.294096/301‑1 (MQ=60)
                                                                       ACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATGTGTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATGCGTTTTCGTTATTTGTCAATGACTGGTATCCCTATTGGTAGTGCGAAACTTATGGGTCAGAGGAGCTATCTTTGTGGGGCTATTTTGCTTTGTAGCAGGCCAGGTATTGGTTGATGCCTTCTCTACACAAATCT                                                                                                                                                                                                                                  <  SRR13385772.1185781/301‑1 (MQ=60)
                                                                                ATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACTCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGT                                                                                                                                                                                                                         >  SRR13385772.335118/1‑301 (MQ=60)
                                                                                                                    ATAGCCAATTTGTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCA                                                                                                                                                                                     <  SRR13385772.594143/301‑1 (MQ=60)
                                                                                                                           ATTTTTTAGCCTATATTTTAACCTGTAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTGTCGTTATTTGGCGATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGTGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCGTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAA                                                                                                                                                                              <  SRR13385772.959607/301‑1 (MQ=60)
                                                                                                                                    CCTCTATTTTAACCTTCAAAGCATGGATCACCGACCCTAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCAC                                                                                                                                                                     >  SRR13385772.307061/1‑301 (MQ=60)
                                                                                                                                    CCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCCCTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCAC                                                                                                                                                                     >  SRR13385772.223172/1‑301 (MQ=60)
                                                                                                                                                        GCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACA                                                                                                                                                    >  SRR13385772.360219/1‑298 (MQ=60)
                                                                                                                                                                                                             CGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATA                                                                                                                                        >  SRR13385772.449145/1‑257 (MQ=60)
                                                                                                                                                                                                                      AATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGAC                                                                                   <  SRR13385772.628152/301‑1 (MQ=60)
                                                                                                                                                                                                                                                     GTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATG                                                    >  SRR13385772.1219375/1‑301 (MQ=60)
                                                                                                                                                                                                                                                      TTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGG                                                   >  SRR13385772.897536/1‑301 (MQ=60)
                                                                                                                                                                                                                                                             TCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAACTCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGCAGCATCTGTAATGTGTTCACATTAATGATGGTTTACACGACTTGGGATATGACTACCGACGACGACTTGGAATCTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGCGTATGATCATGGATTTATGTGCCATGCTTCTTTT                                            >  SRR13385772.1083646/1‑301 (MQ=60)
                                                                                                                                                                                                                                                              CAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACACGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTCAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTT                                           >  SRR13385772.844886/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                  TACTGGTATCCCTATTGGTAGTTCGAAACTTAAGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTT                                        <  SRR13385772.916345/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                            CCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATA                             <  SRR13385772.414982/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       CATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT  <  SRR13385772.1163574/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                          
TGGCGGGTGCATGTTGCTGGGCCTTATTGATAATCGGGTTTTTAGGTTTCAATTTATGGGAAGATGGGACTACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT  >  BK006934/383947‑384542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑