Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 3 4
4 3 4
5 3 4
6 16 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 140 801
Multiple Base Substitutions 9 165
Deletions 30 102
Insertions 31 363
Mobile Element Insertions 0 0
Amplifications 4 8
Gene Conversions 0 0
Inversions 0 0
Total 214 1439

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 59 0 79.3 3391134 98.6% 3343658 146.3
A1 F13 I0 R1 173 0 87.8 3705526 98.2% 3638826 147.4
A1 F13 I1 R1 57 0 95.0 4018144 98.6% 3961889 146.2
A1 F28 I1 R1 58 0 86.4 3622656 98.5% 3568316 146.7
A1 F64 I1 R1 56 0 84.3 3523558 98.6% 3474228 147.3
A2 F14 I0 R1 232 0 80.4 3412326 98.3% 3354316 147.2
A2 F14 I1 R1 59 0 79.4 3383412 98.6% 3336044 146.1
A2 F28 I1 R1 60 0 68.5 2910718 98.5% 2867057 146.6
A2 F63 I1 R1 60 0 80.5 3424120 98.7% 3379606 146.3
A3 F13 I0 R1 211 0 68.8 2930004 98.2% 2877263 146.8
A3 F13 I1 R1 59 0 77.6 3303596 98.5% 3254042 146.2
A3 F27 I1 R1 55 0 52.7 2332204 97.8% 2280895 141.3
A3 F64 I1 R1 61 0 74.9 3138132 98.8% 3100474 146.5
A4 F14 I0 R1 288 0 178.2 7505878 98.3% 7378278 147.8
A4 F14 I1 R1 59 0 71.2 3010026 98.6% 2967885 146.5
A4 F29 I1 R1 60 0 87.9 3708384 98.6% 3656466 147.0
A4 F65 I1 R1 60 0 78.8 3320548 98.8% 3280701 146.1
A5 F13 I0 R1 225 0 82.7 3513940 98.5% 3461230 146.1
A5 F13 I1 R1 59 0 70.2 3012058 98.6% 2969889 146.0
A5 F27 I1 R1 58 0 60.3 2540138 98.6% 2504576 146.9
A5 F63 I1 R1 62 0 72.4 3040988 98.7% 3001455 146.6

Mutation Needle Plot

Mutation Targets

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