breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
MC JC 257,908 Δ776 bp 100% insB9–[crl] insB9, insA9, [crl]
MC JC 1,299,499 Δ1,199 bp 100% insH21 insH21
RA 1,531,598 A→T 20.9% intergenic (‑1094/‑218) yncO ← / → ydcC protein YncO/H repeat‑associated putative transposase YdcC
RA 1,604,819 A→T 27.9% N258I (AAT→ATT)  lsrD → Autoinducer‑2 ABC transporter membrane subunit LsrD
MC JC 1,978,503 Δ776 bp 100% insB5–insA5 insB5, insA5
JC JC 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA5 ← / → uspC IS1 family protein InsA/universal stress protein C
RA 2,173,361 Δ2 bp 100% intergenic (‑488/+920) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 2,735,574 C→T 22.8% M146I (ATG→ATA)  rluD ← 23S rRNA pseudouridine(1911/1915/1917) synthase
RA 3,440,435 C→A 64.2% D199Y (GAC→TAC)  rpoA ← RNA polymerase subunit alpha
RA 3,524,063 T→A 18.3% V398E (GTG→GAG)  mrcA → peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA
RA 3,560,455:1 +G 100% intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 3,656,546 T→A 18.0% K65N (AAA→AAT)  hdeA ← periplasmic acid stress chaperone HdeA
JC 3,815,859 Δ82 bp 63.8% [rph] [rph]
RA 3,836,008 G→A 13.7% intergenic (‑79/‑214) yicJ ← / → selC putative xyloside transporter YicJ/tRNA‑Sec
RA 4,141,133 C→T 28.7% E363E (GAG→GAA)  ptsA ← putative PTS multiphosphoryl transfer protein PtsA
RA 4,296,060 C→T 33.6% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 251374 251431 58 2 [1] [0] 3 dinB DNA polymerase IV
* * ÷ NC_000913 283738 284052 315 2 [1] [1] 2 yagF D‑xylonate dehydratase
* * ÷ NC_000913 285003 285077 75 2 [1] [1] 2 yagF D‑xylonate dehydratase
* * ÷ NC_000913 287563 287679 117 3 [0] [1] 2 yagH putative xylosidase/arabinosidase
* * ÷ NC_000913 288527 288742 216 2 [1] [1] 2 xynR DNA‑binding transcriptional repressor XynR
* * ÷ NC_000913 523849 523967 119 2 [1] [1] 2 rhsD protein RhsD
* * ÷ NC_000913 531682 531734 53 2 [1] [1] 2 allS DNA‑binding transcriptional activator AllS
* * ÷ NC_000913 730165 730228 64 2 [1] [1] 2 rhsC rhs element protein RhsC
* * ÷ NC_000913 803969 803999 31 2 [1] [1] 2 ybhJ putative hydratase YbhJ
* * ÷ NC_000913 985572 985642 71 2 [1] [1] 2 aspC aspartate aminotransferase
* * ÷ NC_000913 1128823 1128915 93 2 [1] [1] 2 murJ lipid II flippase MurJ
* * ÷ NC_000913 1143788 1143827 40 2 [1] [1] 2 rne ribonuclease E
* * ÷ NC_000913 1215483 1215514 32 2 [1] [0] 2 bluF/ycgZ blue light‑ and temperature‑regulated antirepressor BluF/putative two‑component system connector protein YcgZ
* * ÷ NC_000913 1273797 1273819 23 2 [1] [0] 2 ychO putative invasin YchO
* * ÷ NC_000913 1287079 1287094 16 2 [1] [1] 2 rttR small RNA RttR
* * ÷ NC_000913 1309552 1309605 54 2 [1] [1] 2 kch K(+) channel Kch
* * ÷ NC_000913 1356881 1356897 17 2 [0] [1] 2 sapA putative periplasmic binding protein SapA
* * ÷ NC_000913 1403773 1403840 68 2 [1] [1] 2 abgA p‑aminobenzoyl‑glutamate hydrolase subunit A
* * ÷ NC_000913 1465208 1465257 50 2 [1] [1] 2 [ynbG] [ynbG]
* * ÷ NC_000913 1650599 1650613 15 2 [1] [1] 2 ydfD/ynfP lysis protein/protein YnfP
* * ÷ NC_000913 1727497 1727508 12 2 [1] [0] 2 nemA N‑ethylmaleimide reductase
* * ÷ NC_000913 1731377 1731475 99 2 [1] [1] 2 lhr ATP‑dependent helicase Lhr
* * ÷ NC_000913 1768335 1768448 114 2 [1] [1] 2 ydiJ putative FAD‑linked oxidoreductase YdiJ
* * ÷ NC_000913 1782468 1782558 91 2 [1] [1] 2 ydiS putative electron transfer flavoprotein‑quinone oxidoreductase YdiS
* * ÷ NC_000913 1927950 1927962 13 2 [1] [0] 2 ptrB oligopeptidase B
* * ÷ NC_000913 1941131 1941175 45 2 [1] [1] 2 mepM peptidoglycan endopeptidase MepM
* * ÷ NC_000913 1984411 1984425 15 2 [1] [1] 2 araG arabinose ABC transporter ATP binding subunit
* * ÷ NC_000913 2352633 2352641 9 2 [1] [0] 2 glpT/glpA sn‑glycerol 3‑phosphate:phosphate antiporter/anaerobic glycerol‑3‑phosphate dehydrogenase subunit A
* * ÷ NC_000913 2572855 2572877 23 2 [0] [1] 2 eutD phosphate acetyltransferase EutD
* * ÷ NC_000913 2594987 2595009 23 2 [1] [1] 2 tmcA tRNA(Met) cytidine acetyltransferase
* * ÷ NC_000913 2913170 2913193 24 3 [1] [1] 2 relA GDP/GTP pyrophosphokinase
* * ÷ NC_000913 3423901–3424233 3424488–3424241 9–588 2 [1] [1] 2 rrlD 23S ribosomal RNA
* * ÷ NC_000913 3505802 3505813 12 2 [1] [1] 3 yhfS putative aminotransferase YhfS
* * ÷ NC_000913 3509709 3509715 7 3 [0] [1] 3 yhfW putative mutase YhfW
* * ÷ NC_000913 3566515 3566552 38 2 [0] [1] 2 glgP glycogen phosphorylase
* * ÷ NC_000913 4199189 4199283 95 2 [1] [1] 2 nfi endonuclease V
* * ÷ NC_000913 4259093 4259101 9 2 [1] [0] 2 dinF DNA damage‑inducible protein F
* * ÷ NC_000913 4606194 4606251 58 2 [1] [1] 2 [leuP] [leuP]