mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 61.5% | 3.2 / 11.2 | 13 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 341,039 | 0 | C | A | 58.3% | 0.2 / 17.3 | 12 | intergenic (+337/‑76) | BW25113_RS01680/BW25113_RS01685 | hypothetical protein/hypothetical protein |
| * | NZ_CP009273 | 684,970 | 0 | A | C | 58.3% | 0.1 / 11.1 | 12 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 57.9% | 2.5 / 18.8 | 19 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 55.6% | 17.1 / 22.5 | 18 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,781,385 | 0 | T | G | 55.0% | 7.2 / 17.6 | 20 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NZ_CP009273 | 333,785 | 0 | G | T | 54.5% | 11.4 / 17.1 | 11 | V433L (GTG→TTG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 54.5% | ‑0.4 / 11.4 | 11 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 3,726,650 | 0 | G | C | 53.3% | 11.4 / 21.2 | 15 | A364P (GCC→CCC) | xylG | D‑xylose ABC transporter ATP‑binding protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 53.3% | ‑1.4 / 14.2 | 17 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 69,905 | 0 | A | C | 52.9% | 11.5 / 16.5 | 17 | G368G (GGT→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 52.9% | 7.7 / 20.7 | 17 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,041,297 | 0 | G | . | 26.7% | 33.3 / 10.1 | 15 | coding (1104/2874 nt) | gcvP | aminomethyl‑transferring glycine dehydrogenase |
| * | NZ_CP009273 | 3,041,298 | 0 | G | . | 26.7% | 33.0 / 10.1 | 15 | coding (1103/2874 nt) | gcvP | aminomethyl‑transferring glycine dehydrogenase |
| * | NZ_CP009273 | 3,041,302 | 0 | G | . | 26.7% | 32.4 / 10.1 | 15 | coding (1099/2874 nt) | gcvP | aminomethyl‑transferring glycine dehydrogenase |