mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 33 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 63.3% | 11.8 / 44.2 | 30 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 61.5% | ‑5.9 / 10.5 | 13 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 61.5% | ‑3.1 / 11.0 | 13 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 61.5% | 4.3 / 11.0 | 13 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 5,162 | 0 | T | A | 57.1% | 0.7 / 13.4 | 14 | intergenic (+142/‑72) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 416,461 | 0 | T | A | 57.1% | 5.2 / 14.7 | 14 | L7Q (CTA→CAA) | proY | proline‑specific permease ProY |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 57.1% | 3.0 / 11.4 | 14 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 1,033,811 | 0 | T | G | 56.2% | 11.9 / 17.4 | 16 | Y206D (TAT→GAT) | appC | cytochrome bd‑II oxidase subunit 1 |
| * | NZ_CP009273 | 3,578,446 | 0 | A | C | 56.2% | 3.0 / 16.7 | 16 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltransferase |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 55.6% | 4.8 / 23.0 | 18 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 3,175,946 | 0 | C | G | 55.6% | 13.3 / 26.6 | 18 | A13G (GCA→GGA) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,750,765 | 0 | A | C | 55.6% | 16.9 / 22.2 | 18 | G141G (GGT→GGG) | yiaY | L‑threonine dehydrogenase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 54.8% | 29.0 / 40.1 | 32 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,549,345 | 0 | T | G | 54.5% | 5.3 / 10.1 | 11 | T139P (ACC→CCC) | eutL | ethanolamine utilization microcompartment protein EutL |
| * | NZ_CP009273 | 1,353,362 | 0 | A | C | 53.8% | 11.9 / 14.0 | 13 | V28G (GTG→GGG) | puuP | putrescine/proton symporter PuuP |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 53.8% | 10.3 / 15.5 | 13 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 53.6% | 6.3 / 34.4 | 28 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 53.6% | 10.6 / 36.8 | 28 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 360,140 | 0 | A | C | 53.3% | 4.2 / 11.8 | 15 | intergenic (‑71/+215) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| * | NZ_CP009273 | 369,093 | 0 | T | G | 53.3% | 16.1 / 19.1 | 15 | G239G (GGT→GGG) | mhpF | acetaldehyde dehydrogenase |