mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,884 | C→T | P21L (CCG→CTG) | folA → | type 3 dihydrofolate reductase |
| RA | 214,743 | A→C | Y174D (TAC→GAC) | proS ← | proline‑‑tRNA ligase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357568 | 588 | 3 [0] | [0] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 578977 | 578987 | 11 | 2 [0] | [0] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 579472 | 579477 | 6 | 2 [0] | [0] 2 | appY | DNA‑binding transcriptional activator AppY |
| * | * | ÷ | NZ_CP009273 | 651724 | 651726 | 3 | 3 [0] | [0] 2 | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
| * | * | ÷ | NZ_CP009273 | 766578 | 766588 | 11 | 2 [1] | [1] 3 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | * | ÷ | NZ_CP009273 | 896207 | 896221 | 15 | 3 [1] | [1] 2 | artJ/artM | ABC transporter substrate‑binding protein ArtJ/arginine ABC transporter permease ArtM |
| * | * | ÷ | NZ_CP009273 | 902992 | 903040 | 49 | 2 [1] | [0] 2 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1164358 | 1164434 | 77 | 2 [1] | [1] 2 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
| * | * | ÷ | NZ_CP009273 | 1211937 | 1212004 | 68 | 2 [1] | [1] 3 | ariR | biofilm/acid‑resistance regulator AriR |
| * | * | ÷ | NZ_CP009273 | 1329185 | 1329213 | 29 | 2 [0] | [1] 2 | cysB/ymiA | HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein |
| * | * | ÷ | NZ_CP009273 | 1337747 | 1337767 | 21 | 2 [1] | [0] 2 | osmB/yciT | osmotically‑inducible lipoprotein OsmB/DNA‑binding transcriptional regulator YciT |
| * | * | ÷ | NZ_CP009273 | 1398903 | 1398910 | 8 | 2 [0] | [0] 4 | abgA/abgR | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA/LysR family transcriptional regulator |
| * | * | ÷ | NZ_CP009273 | 1435270 | 1435276 | 7 | 2 [0] | [1] 2 | nifJ/ydbJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase/DUF333 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1524282 | 1524322 | 41 | 2 [1] | [1] 2 | BW25113_RS07645/BW25113_RS26145 | RHS repeat protein/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1539068 | 1539185 | 118 | 2 [0] | [0] 3 | BW25113_RS07710 | leucine‑rich repeat domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1708718 | 1708738 | 21 | 2 [0] | [1] 2 | gstA | glutathione transferase GstA |
| * | * | ÷ | NZ_CP009273 | 1729586 | 1729606 | 21 | 2 [1] | [1] 2 | mepH/sodB | peptidoglycan DD‑endopeptidase MepH/superoxide dismutase [Fe] |
| * | * | ÷ | NZ_CP009273 | 1864538 | 1864579 | 42 | 2 [1] | [1] 3 | yeaH/cdgI | YeaH/YhbH family protein/GGDEF domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1864668 | 1864680 | 13 | 3 [1] | [1] 3 | cdgI | GGDEF domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2097485 | 2097486 | 2 | 3 [0] | [0] 2 | wbbK | glycosyltransferase family 1 protein |
| * | * | ÷ | NZ_CP009273 | 2379251 | 2379255 | 5 | 2 [1] | [0] 2 | yfbK/yfbL | VWA domain‑containing protein/M28 family metallopeptidase |
| * | * | ÷ | NZ_CP009273 | 2462917 | 2462946 | 30 | 3 [1] | [0] 2 | BW25113_RS12270 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2752294 | 2752343 | 50 | 2 [1] | [1] 2 | alpA/yfjI | DNA‑binding transcriptional activator AlpA/YfjI family protein |
| * | * | ÷ | NZ_CP009273 | 2753693 | 2753714 | 22 | 2 [1] | [1] 3 | yfjI | YfjI family protein |
| * | * | ÷ | NZ_CP009273 | 3129950 | 3129950 | 1 | 2 [0] | [0] 2 | pitB/gss | inorganic phosphate transporter PitB/bifunctional glutathionylspermidine amidase/synthase |
| * | * | ÷ | NZ_CP009273 | 4465879 | 4465894 | 16 | 2 [0] | [0] 4 | BW25113_RS22080 | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 85 (3.260) | 32/156 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 8 (0.310) | 13 (0.630) | 11/124 | 0.5 | 77.9% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 1 (0.050) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 7 (0.270) | 4/154 | 1.7 | 87.6% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 1 (0.040) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 29 (1.110) | 19/156 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||