mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 172,920 | 0 | C | A | 61.1% | 1.1 / 20.6 | 18 | P443T (CCG→ACG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 60.5% | ‑1.4 / 48.0 | 43 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 59.1% | 5.0 / 27.1 | 22 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 57.1% | 17.6 / 44.4 | 35 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 57.1% | 16.2 / 27.0 | 21 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 55.6% | 2.3 / 21.2 | 18 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 55.6% | 7.6 / 22.5 | 18 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 55.6% | 8.6 / 19.0 | 18 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 2,334,242 | 0 | T | C | 55.6% | 6.5 / 22.2 | 18 | Q1136R (CAG→CGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 645,914 | 0 | A | G | 54.5% | 6.0 / 12.4 | 11 | T11T (ACT→ACC) ‡ | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 645,916 | 0 | T | G | 54.5% | 8.7 / 12.5 | 11 | T11P (ACT→CCT) ‡ | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 1,995,399 | 0 | A | C | 53.8% | 7.7 / 14.3 | 13 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
| * | NZ_CP009273 | 2,447,248 | 0 | A | C | 53.8% | 6.8 / 14.9 | 13 | pseudogene (1233/2646 nt) | yfcU | fimbrial usher protein YfcU |
| * | NZ_CP009273 | 3,268,200 | 0 | T | A | 53.8% | ‑0.3 / 15.7 | 13 | I23F (ATT→TTT) | garP | galactarate/glucarate/glycerate transporter GarP |
| * | NZ_CP009273 | 169,398 | 0 | A | G | 52.6% | 13.8 / 27.3 | 19 | M484V (ATG→GTG) | fhuB | Fe(3+)‑hydroxamate ABC transporter permease FhuB |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 52.6% | 7.8 / 20.9 | 19 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 2,334,224 | 0 | T | A | 52.6% | 13.5 / 27.4 | 19 | D1142V (GAT→GTT) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 51.5% | 35.6 / 52.3 | 33 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 51.2% | 22.1 / 59.9 | 43 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 50.0% | 9.5 / 10.8 | 18 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3493871 | 23 (0.880) | 3 (0.130) | 3/138 | 1.9 | 13.5% | coding (603/1338 nt) | frlA | fructoselysine/psicoselysine transporter |
| ? | NZ_CP009273 | = 3494083 | 18 (0.780) | coding (815/1338 nt) | frlA | fructoselysine/psicoselysine transporter | |||||