mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,884 | C→T | P21L (CCG→CTG) | folA → | type 3 dihydrofolate reductase |
| RA | 214,743 | A→C | Y174D (TAC→GAC) | proS ← | proline‑‑tRNA ligase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357568 | 588 | 2 [0] | [1] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 380269 | 380289 | 21 | 2 [1] | [1] 2 | BW25113_RS01880/tauA | PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein |
| * | * | ÷ | NZ_CP009273 | 524158 | 524205 | 48 | 2 [1] | [1] 2 | BW25113_RS24960 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 716403 | 716423 | 21 | 2 [0] | [0] 2 | BW25113_RS26090/kdpE | leader peptide SpeFL/two‑component system response regulator KdpE |
| * | * | ÷ | NZ_CP009273 | 766536 | 766588 | 53 | 2 [1] | [1] 6 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | * | ÷ | NZ_CP009273 | 772577 | 772589 | 13 | 2 [0] | [1] 2 | tolA | cell envelope integrity protein TolA |
| * | * | ÷ | NZ_CP009273 | 982952 | 982984 | 33 | 2 [1] | [0] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 1032599 | 1032608 | 10 | 2 [0] | [1] 4 | hyaF | hydrogenase expression/formation protein |
| * | * | ÷ | NZ_CP009273 | 1193181 | 1193252 | 72 | 2 [1] | [1] 2 | BW25113_RS05920 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1207571 | 1207614 | 44 | 2 [1] | [0] 2 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1294935 | 1294979 | 45 | 3 [0] | [1] 2 | BW25113_RS25865 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1459434 | 1459536 | 103 | 2 [1] | [1] 2 | [BW25113_RS25580] | [BW25113_RS25580] |
| * | * | ÷ | NZ_CP009273 | 1540358 | 1540506 | 149 | 2 [1] | [1] 2 | yddL/yddG | porin/aromatic amino acid efflux DMT transporter YddG |
| * | * | ÷ | NZ_CP009273 | 1632026 | 1632034 | 9 | 2 [1] | [0] 2 | gnsB | addiction module toxin, GnsA/GnsB family |
| * | * | ÷ | NZ_CP009273 | 1663836 | 1663889 | 54 | 4 [1] | [1] 2 | [ynfL] | [ynfL] |
| * | * | ÷ | NZ_CP009273 | 2102762 | 2102777 | 16 | 2 [1] | [1] 4 | wzx | O16 family O‑antigen flippase |
| * | * | ÷ | NZ_CP009273 | 2379234 | 2379266 | 33 | 2 [1] | [1] 2 | yfbK/yfbL | VWA domain‑containing protein/M28 family metallopeptidase |
| * | * | ÷ | NZ_CP009273 | 2380368 | 2380380 | 13 | 2 [1] | [0] 2 | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | * | ÷ | NZ_CP009273 | 2449367 | 2449397 | 31 | 2 [1] | [1] 3 | yfcV/sixA | fimbrial protein/phosphohistidine phosphatase SixA |
| * | * | ÷ | NZ_CP009273 | 2622985 | 2623077 | 93 | 2 [1] | [1] 2 | yfgG/yfgH | YfgG family protein/glycine zipper 2TM domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2753673 | 2753715 | 43 | 2 [1] | [1] 2 | yfjI | YfjI family protein |
| * | * | ÷ | NZ_CP009273 | 2899026 | 2899068 | 43 | 2 [1] | [1] 2 | [BW25113_RS14445] | [BW25113_RS14445] |
| * | * | ÷ | NZ_CP009273 | 2975712 | 2975773 | 62 | 2 [1] | [1] 2 | araE/kduD | arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
| * | * | ÷ | NZ_CP009273 | 2988641 | 2988665 | 25 | 2 [1] | [1] 2 | BW25113_RS14850/BW25113_RS26010 | response regulator transcription factor/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 3262697 | 3262769 | 73 | 2 [1] | [1] 2 | yhaC | YhaC family protein |
| * | * | ÷ | NZ_CP009273 | 3354280 | 3354290 | 11 | 3 [0] | [1] 3 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 3721235 | 3721235 | 1 | 2 [0] | [0] 2 | BW25113_RS18495/xylB | inner membrane protein YiaB/xylulokinase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287112 | NA (NA) | 24 (1.160) | 19/166 | 0.1 | 88.9% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 481716 = | 3 (0.140) | coding (500/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 39 (1.880) | 21/166 | 0.1 | 47.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 43 (2.070) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 481724 | 3 (0.140) | 15 (0.720) | 12/166 | 0.5 | 83.3% | coding (508/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 1046001 | NA (NA) | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH | |||||
| * | ? | NZ_CP009273 | 1203246 = | 6 (0.290) | 14 (0.840) | 11/134 | 0.3 | 74.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 5 (0.300) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 6 (0.290) | 21 (1.250) | 15/134 | 0.1 | 81.0% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 5 (0.300) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 13 (0.630) | 7/164 | 1.0 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 31 (1.490) | 21/166 | 0.1 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||