mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 66.7% | 1.7 / 11.7 | 16 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 64.3% | 2.4 / 10.7 | 14 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,431,963 | 0 | A | G | 61.9% | ‑1.3 / 15.4 | 21 | S11P (TCC→CCC) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 61.5% | ‑0.3 / 11.9 | 13 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 990,954 | 0 | A | G | 61.5% | 0.8 / 11.7 | 13 | F164S (TTC→TCC) | ssuD | FMNH2‑dependent alkanesulfonate monooxygenase |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 60.0% | 10.5 / 16.1 | 15 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 3,977,450 | 0 | T | C | 60.0% | 5.0 / 14.6 | 20 | F378S (TTC→TCC) | aslB | anaerobic sulfatase maturase |
| * | NZ_CP009273 | 4,572,320 | 0 | C | A | 58.3% | 2.4 / 13.0 | 12 | L182F (TTG→TTT) | hsdM | type I restriction‑modification system methyltransferase |
| * | NZ_CP009273 | 2,921,519 | 0 | A | T | 57.7% | 2.1 / 27.7 | 26 | intergenic (+488/‑69) | ppnN/sdaC | nucleotide 5'‑monophosphate nucleosidase PpnN/HAAAP family serine/threonine permease SdaC |
| * | NZ_CP009273 | 1,467,659 | 0 | G | T | 57.1% | 0.3 / 17.8 | 14 | pseudogene (2887/3498 nt) | BW25113_RS07370 | autotransporter domain‑containing protein |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 57.1% | ‑3.1 / 26.6 | 28 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 56.2% | 13.4 / 20.2 | 16 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 56.2% | 0.5 / 14.4 | 16 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 3,634,341 | 0 | C | T | 56.2% | ‑3.3 / 13.3 | 16 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 55.6% | 3.4 / 19.1 | 18 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 55.6% | 12.4 / 20.3 | 18 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 54.5% | 8.6 / 13.3 | 11 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 1,068,184 | 0 | T | G | 53.8% | 12.0 / 16.9 | 13 | T46P (ACT→CCT) | rutB | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 53.8% | 2.0 / 11.3 | 13 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 3,941,189 | 0 | G | A | 53.8% | 5.3 / 14.6 | 13 | L47F (CTT→TTT) | hdfR | HTH‑type transcriptional regulator HdfR |