mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 31 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,775,223 | 0 | T | G | 68.4% | 9.7 / 15.2 | 19 | T234P (ACC→CCC) | cysE | serine O‑acetyltransferase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 68.4% | ‑2.6 / 11.5 | 19 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 63.2% | ‑2.7 / 12.8 | 19 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 842,900 | 0 | G | T | 61.1% | 3.8 / 24.6 | 18 | I187I (ATC→ATA) | glnH | glutamine ABC transporter substrate‑binding protein GlnH |
| * | NZ_CP009273 | 700,041 | 0 | T | G | 57.1% | 11.5 / 13.7 | 15 | G214G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 56.2% | 14.5 / 18.6 | 16 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 3,924,078 | 0 | T | G | 56.2% | 5.0 / 12.4 | 17 | T126P (ACC→CCC) | ravA | ATPase RavA |
| * | NZ_CP009273 | 490,006 | 0 | G | C | 55.6% | 3.0 / 10.7 | 9 | R49P (CGG→CCG) | recR | recombination mediator RecR |
| * | NZ_CP009273 | 4,292,475 | 0 | T | G | 55.0% | 26.9 / 29.1 | 20 | T141P (ACC→CCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 1,698,298 | 0 | G | T | 54.5% | 7.6 / 15.1 | 11 | H90N (CAT→AAT) | ydgJ | oxidoreductase |
| * | NZ_CP009273 | 4,321,607 | 0 | T | G | 54.5% | 10.5 / 13.5 | 11 | V430G (GTT→GGT) | proP | glycine betaine/L‑proline transporter ProP |
| * | NZ_CP009273 | 4,321,611 | 0 | T | G | 54.5% | 11.7 / 13.7 | 11 | G431G (GGT→GGG) | proP | glycine betaine/L‑proline transporter ProP |
| * | NZ_CP009273 | 4,321,617 | 0 | C | T | 54.5% | 5.1 / 11.4 | 11 | I433I (ATC→ATT) | proP | glycine betaine/L‑proline transporter ProP |
| * | NZ_CP009273 | 3,964,466 | 0 | T | G | 53.8% | 11.0 / 16.2 | 13 | V325G (GTA→GGA) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 4,441,387 | 0 | A | C | 53.8% | 7.5 / 13.2 | 13 | E171D (GAA→GAC) | ytfR | sugar ABC transporter ATP‑binding protein |
| * | NZ_CP009273 | 700,031 | 0 | T | G | 53.3% | 11.7 / 15.7 | 15 | V211G (GTT→GGT) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 53.3% | 8.1 / 18.1 | 15 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,978,066 | 0 | T | G | 53.3% | 10.6 / 14.3 | 15 | T296P (ACC→CCC) | yqeF | acetyl‑CoA C‑acetyltransferase |
| * | NZ_CP009273 | 2,978,077 | 0 | G | C | 53.3% | 5.9 / 17.4 | 15 | P292R (CCG→CGG) | yqeF | acetyl‑CoA C‑acetyltransferase |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 53.3% | 14.2 / 18.4 | 15 | E391D (GAA→GAC) | guaD | guanine deaminase |