mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 140 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,601 | 0 | C | A | 60.7% | 3.6 / 29.9 | 28 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,557,645 | 0 | T | G | 57.9% | 17.1 / 21.7 | 19 | L782L (CTA→CTC) | dosP | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 56.5% | 47.3 / 61.7 | 46 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 56.5% | 12.7 / 29.3 | 23 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 56.2% | 26.5 / 64.8 | 48 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 55.6% | 14.0 / 19.3 | 18 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 55.6% | 25.9 / 99.9 | 72 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 510,080 | 0 | A | C | 55.0% | 19.9 / 28.3 | 21 | V79G (GTG→GGG) | ybbJ | NfeD family protein |
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 55.0% | 14.2 / 32.6 | 20 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 1,287,911 | 0 | C | A | 54.5% | 9.0 / 18.1 | 11 | intergenic (+90/+54) | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS |
| * | NZ_CP009273 | 1,287,914 | 0 | T | A | 54.5% | 1.9 / 13.4 | 11 | intergenic (+93/+51) | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 53.6% | 23.3 / 35.6 | 28 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 52.9% | 36.0 / 53.7 | 34 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 701,009 | 0 | T | A | 52.4% | 7.6 / 23.7 | 21 | I537N (ATC→AAC) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 52.0% | 50.3 / 81.3 | 50 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 51.6% | 19.4 / 40.9 | 31 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,336,492 | 0 | T | G | 51.3% | 37.0 / 59.3 | 37 | T218P (ACC→CCC) | fumB | class I fumarate hydratase |
| * | NZ_CP009273 | 371,042 | 0 | A | C | 50.0% | 25.7 / 12.7 | 30 | Q43P (CAG→CCG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 2,999,371 | 0 | C | T | 50.0% | 24.1 / 20.7 | 32 | intergenic (‑226/‑253) | ygeV/ygeW | sigma‑54‑dependent Fis family transcriptional regulator/knotted carbamoyltransferase YgeW |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 50.0% | 47.1 / 53.0 | 72 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |