mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356976 | 357574 | 599 | 3 [1] | [1] 3 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 1294941 | 1294965 | 25 | 2 [1] | [1] 2 | BW25113_RS25865 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1521442 | 1521457 | 16 | 2 [1] | [1] 2 | yncH/BW25113_RS07645 | YncH family protein/RHS repeat protein |
| * | * | ÷ | NZ_CP009273 | 1633164 | 1633184 | 21 | 2 [1] | [0] 2 | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2099575 | 2099588 | 14 | 3 [1] | [0] 3 | wzy | O16 family O‑antigen polymerase |
| * | * | ÷ | NZ_CP009273 | 2144481 | 2144532 | 52 | 3 [1] | [0] 2 | yegI/yegJ | protein kinase YegI/DUF2314 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2491959 | 2492000 | 42 | 2 [0] | [1] 2 | alaC/ypdA | alanine transaminase/two‑component system sensor histidine kinase YpdA |
| * | * | ÷ | NZ_CP009273 | 2988535 | 2988579 | 45 | 2 [1] | [1] 2 | BW25113_RS14850/BW25113_RS26010 | response regulator transcription factor/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 3751291 | 3751310 | 20 | 3 [1] | [1] 3 | yiaY/selB | L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor |
| * | * | ÷ | NZ_CP009273 | 3792572 | 3792725 | 154 | 2 [1] | [1] 3 | [waaU]–[waaZ] | [waaU],[waaZ] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287110 | NA (NA) | 27 (1.080) | 19/164 | 0.2 | 54.6% | intergenic (‑53/‑101) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 1902783 = | 23 (0.900) | coding (23/288 nt) | yebO | YebO family protein | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 48 (1.880) | 24/168 | 0.1 | 50.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 48 (1.880) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 18 (0.710) | 14/168 | 0.5 | 54.5% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1999990 | 15 (0.590) | coding (354/1488 nt) | amyA | alpha‑amylase | |||||
| * | ? | NZ_CP009273 | = 1203261 | 14 (0.550) | 6 (0.290) | 6/136 | 1.0 | 31.3% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 15 (0.730) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 4532499 = | 6 (0.240) | 12 (0.530) | 9/150 | 0.7 | 62.6% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 9 (0.400) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||