mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 50 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 72.2% | 7.4 / 12.1 | 18 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 70.0% | 1.4 / 13.4 | 20 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 64.7% | 6.0 / 14.6 | 17 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,214,118 | 0 | C | A | 62.5% | 1.9 / 18.0 | 16 | A422A (GCC→GCA) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 899,438 | 0 | A | C | 61.9% | 13.5 / 21.0 | 21 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 3,744,897 | 0 | A | C | 59.3% | 24.6 / 35.3 | 27 | V111G (GTT→GGT) | yiaT | MipA/OmpV family protein |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 58.8% | 3.1 / 19.8 | 17 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 58.8% | 10.2 / 16.4 | 17 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.8% | 4.3 / 37.3 | 34 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 58.3% | ‑4.7 / 10.6 | 12 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 58.3% | 2.1 / 10.4 | 13 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 2,832,711 | 0 | T | G | 57.1% | 8.3 / 18.5 | 21 | intergenic (‑88/‑172) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 2,852,466 | 0 | T | G | 57.1% | 5.1 / 20.5 | 21 | V672G (GTG→GGG) | mutS | DNA mismatch repair protein MutS |
| * | NZ_CP009273 | 3,515,736 | 0 | T | G | 57.1% | 8.3 / 13.8 | 14 | S125S (TCA→TCC) | hofM | DNA utilization protein HofM |
| * | NZ_CP009273 | 822,410 | 0 | A | T | 56.2% | 4.6 / 21.0 | 16 | I100N (ATT→AAT) | ybhS | ABC transporter permease |
| * | NZ_CP009273 | 2,889,008 | 0 | A | C | 55.6% | 10.9 / 18.5 | 18 | V44G (GTG→GGG) | ygcQ | electron transfer flavoprotein subunit alpha/FixB family protein |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 55.6% | 12.2 / 24.6 | 18 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 263,428 | 0 | G | T | 54.5% | 0.4 / 11.0 | 11 | Q97K (CAG→AAG) | yafZ | DUF932 domain‑containing protein |
| * | NZ_CP009273 | 1,053,948 | 0 | A | C | 54.5% | 3.8 / 10.7 | 11 | T137P (ACC→CCC) | torC | pentaheme c‑type cytochrome TorC |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 54.5% | 39.7 / 50.5 | 33 | T275P (ACC→CCC) | htpX | protease HtpX |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1203246 = | 14 (0.550) | 3 (0.150) | 3/136 | 1.7 | 18.6% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 15 (0.730) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||