mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 50,307 | 0 | G | T | 60.0% | 4.3 / 10.9 | 10 | intergenic (+5/+73) | folA/apaH | type 3 dihydrofolate reductase/bis(5'‑nucleosyl)‑tetraphosphatase (symmetrical) ApaH |
| * | NZ_CP009273 | 240,199 | 0 | G | T | 60.0% | 5.6 / 11.4 | 10 | C57F (TGC→TTC) | lpcA | D‑sedoheptulose 7‑phosphate isomerase |
| * | NZ_CP009273 | 1,698,298 | 0 | G | T | 60.0% | ‑1.9 / 11.5 | 10 | H90N (CAT→AAT) | ydgJ | oxidoreductase |
| * | NZ_CP009273 | 3,578,446 | 0 | A | C | 57.1% | 3.0 / 15.5 | 14 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltransferase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 56.2% | 13.9 / 28.1 | 16 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 55.0% | 3.9 / 21.2 | 20 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 55.0% | 5.0 / 23.4 | 20 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,012,931 | 0 | A | C | 54.5% | 0.5 / 10.9 | 11 | T138P (ACA→CCA) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 4,368,602 | 0 | G | T | 54.5% | 6.1 / 16.5 | 11 | P54T (CCT→ACT) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 4,368,606 | 0 | A | C | 54.5% | 6.9 / 12.7 | 11 | G52G (GGT→GGG) | ampC | BlaEC family class C beta‑lactamase |