mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 2,962,266 | Δ1 bp | coding (71/531 nt) | rppH ← | RNA pyrophosphohydrolase |
| RA | 3,370,599 | T→G | T61P (ACC→CCC) | sspA ← | stringent starvation protein A |
| JC | 3,631,312 | (ATGTTGCTGGCGGC)1→2 | coding (311/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357568 | 588 | 4 [0] | [1] 3 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 970353 | 970372 | 20 | 2 [1] | [1] 2 | mukF | chromosome partition protein MukF |
| * | * | ÷ | NZ_CP009273 | 1229383 | 1229387 | 5 | 2 [0] | [1] 2 | nhaB | Na(+)/H(+) antiporter NhaB |
| * | * | ÷ | NZ_CP009273 | 1453652 | 1453660 | 9 | 2 [0] | [1] 2 | paaC | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 60 (1.990) | 30/168 | 0.1 | 47.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 66 (2.190) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 7 (0.230) | 17 (0.700) | 14/136 | 0.4 | 71.3% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 8 (0.330) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 4532499 = | 4 (0.130) | 23 (0.860) | 15/150 | 0.4 | 79.9% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 8 (0.300) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 4 (0.130) | 34 (1.270) | 24/150 | 0.1 | 85.5% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 8 (0.300) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||