mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 68 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 69.2% | ‑0.7 / 19.3 | 26 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 1,485,355 | 0 | A | C | 64.3% | 4.8 / 11.6 | 14 | Y66S (TAC→TCC) | cybB | cytochrome b561 |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 62.5% | ‑0.2 / 15.0 | 16 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 62.5% | ‑0.1 / 10.9 | 16 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 4,245,973 | 0 | T | G | 62.5% | 9.5 / 11.7 | 16 | N141T (AAC→ACC) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |
| * | NZ_CP009273 | 1,673,561 | 0 | A | C | 61.9% | 14.3 / 18.6 | 21 | Y293S (TAC→TCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 4,058,967 | 0 | T | C | 61.5% | 7.6 / 24.8 | 26 | I54V (ATT→GTT) | yihO | MFS transporter |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 60.0% | 2.7 / 17.4 | 15 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 60.0% | ‑6.3 / 14.0 | 15 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 353,586 | 0 | A | T | 58.8% | ‑1.8 / 17.6 | 17 | N272K (AAT→AAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 58.8% | ‑5.2 / 18.0 | 17 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,225,954 | 0 | A | G | 58.8% | 4.1 / 16.0 | 17 | S41G (AGT→GGT) | yjbE | exopolysaccharide production protein YjbE |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 58.3% | 14.3 / 24.1 | 24 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 1,434,643 | 0 | A | C | 57.9% | 14.6 / 21.3 | 19 | G133G (GGT→GGG) | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| * | NZ_CP009273 | 4,290,979 | 0 | T | G | 57.1% | 2.7 / 12.8 | 14 | T639T (ACA→ACC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 2,380,347 | 0 | T | A | 56.2% | 10.7 / 20.2 | 17 | intergenic (+37/‑66) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,134,407 | 0 | A | C | 55.2% | 24.8 / 37.3 | 29 | G229G (GGT→GGG) | asmA | outer membrane assembly protein AsmA |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 55.0% | 15.9 / 22.5 | 20 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 766,353 | 0 | T | G | 54.5% | 7.2 / 12.4 | 11 | intergenic (+286/‑561) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | NZ_CP009273 | 1,125,830 | 0 | C | T | 53.3% | 2.6 / 17.4 | 15 | A164T (GCG→ACG) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3851553 = | 52 (1.730) | 4 (0.160) | 4/142 | 1.6 | 9.2% | coding (212/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase |
| ? | NZ_CP009273 | 3851602 = | 35 (1.380) | coding (163/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase | |||||
| * | ? | NZ_CP009273 | 4623274 = | 26 (0.860) | 4 (0.150) | 4/150 | 1.7 | 14.5% | coding (289/513 nt) | yjjX | inosine/xanthosine triphosphatase |
| ? | NZ_CP009273 | 4623410 = | 24 (0.890) | coding (153/513 nt) | yjjX | inosine/xanthosine triphosphatase | |||||
| * | ? | NZ_CP009273 | 3248600 = | 22 (0.730) | 4 (0.150) | 4/148 | 1.7 | 19.3% | intergenic (+34/+100) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase |
| ? | NZ_CP009273 | 3248653 = | 14 (0.530) | intergenic (+87/+47) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase | |||||
| * | ? | NZ_CP009273 | 2442890 = | 27 (0.900) | 3 (0.100) | 3/162 | 2.1 | 10.2% | coding (639/822 nt) | yfcO | fimbrial adhesin YfcO |
| ? | NZ_CP009273 | 2442931 = | 27 (0.930) | coding (598/822 nt) | yfcO | fimbrial adhesin YfcO | |||||