mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 64 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 172,755 | 0 | A | G | 68.6% | ‑0.5 / 27.9 | 35 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 67.9% | 10.8 / 37.7 | 56 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,430,446 | 0 | A | C | 64.7% | 3.3 / 12.1 | 17 | G235G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 64.7% | 6.7 / 12.1 | 17 | G234G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 64.3% | ‑3.4 / 13.7 | 14 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 64.3% | 10.7 / 41.9 | 56 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 62.5% | 4.2 / 12.7 | 16 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 536,033 | 0 | G | T | 61.5% | 4.6 / 18.0 | 13 | A5S (GCA→TCA) | ybbY | uracil/xanthine transporter |
| * | NZ_CP009273 | 1,579,118 | 0 | T | G | 60.0% | 9.1 / 12.1 | 15 | K542N (AAA→AAC) | ydeP | acid resistance putative oxidoreductase YdeP |
| * | NZ_CP009273 | 2,001,832 | 0 | T | G | 57.1% | 5.7 / 10.7 | 14 | G25G (GGT→GGG) | yedE | selenium metabolism membrane protein YedE/FdhT |
| * | NZ_CP009273 | 443,152 | 0 | T | A | 56.2% | 4.8 / 18.1 | 16 | K4* (AAG→TAG) | cyoE | heme o synthase |
| * | NZ_CP009273 | 760,200 | 0 | A | T | 56.2% | 6.9 / 19.9 | 16 | I189F (ATC→TTC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 2,626,314 | 0 | A | C | 56.2% | 14.9 / 19.7 | 16 | G372G (GGT→GGG) | guaB | IMP dehydrogenase |
| * | NZ_CP009273 | 3,126,661 | 0 | T | G | 56.2% | 3.8 / 19.3 | 16 | H219P (CAC→CCC) | yghS | dTMP kinase |
| * | NZ_CP009273 | 2,380,342 | 0 | C | A | 55.6% | 5.1 / 12.8 | 9 | intergenic (+32/‑71) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 55.6% | 11.9 / 13.8 | 18 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 55.0% | 15.4 / 24.2 | 20 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 228,196 | 0 | T | G | 54.5% | 8.0 / 10.3 | 13 | R196R (CGT→CGG) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 54.5% | 10.3 / 12.6 | 11 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 890,386 | 0 | A | C | 54.5% | 7.8 / 10.1 | 11 | intergenic (+34/‑61) | potF/potG | spermidine/putrescine ABC transporter substrate‑binding protein PotF/putrescine ABC transporter ATP‑binding subunit PotG |