mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4549922 = | 133 (1.520) | 6 (0.070) | 6/242 | NT | 4.7% | intergenic (+212/+31) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| ? | NC_000913 | 4549943 = | 120 (1.490) | intergenic (+233/+10) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | 4353155 = | 140 (1.600) | 4 (0.050) | 4/232 | NT | 3.4% | intergenic (+74/+45) | ghoT/lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| ? | NC_000913 | 4353189 = | 104 (1.350) | intergenic (+108/+11) | ghoT/lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible | |||||
| * | ? | NC_000913 | = 4347375 | 113 (1.290) | 4 (0.050) | 4/244 | NT | 3.6% | intergenic (‑49/+29) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | NC_000913 | = 4347385 | 111 (1.360) | intergenic (‑59/+19) | fumB/dcuB | anaerobic class I fumarate hydratase (fumarase B)/C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | NC_000913 | 4235570 = | 125 (1.430) | 3 (0.040) | 3/244 | NT | 2.6% | intergenic (+163/‑336) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913 | 4235593 = | 112 (1.380) | intergenic (+186/‑313) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | 4106361 = | 132 (1.510) | 4 (0.050) | 4/246 | NT | 3.2% | intergenic (+41/‑108) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| ? | NC_000913 | 4106380 = | 121 (1.480) | intergenic (+60/‑89) | cpxP/fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter | |||||
| * | ? | NC_000913 | 4104862 = | 128 (1.470) | 3 (0.040) | 3/248 | NT | 2.4% | coding (114/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR |
| ? | NC_000913 | 4104892 = | 124 (1.500) | coding (84/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR | |||||
| * | ? | NC_000913 | = 4053529 | 129 (1.560) | 3 (0.040) | 3/248 | NT | 2.3% | intergenic (+111/+118) | hemN/yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| ? | NC_000913 | = 4053613 | NA (NA) | noncoding (84/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3967703 | 164 (1.880) | 4 (0.050) | 4/238 | NT | 2.5% | intergenic (+27/‑213) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967707 | 168 (2.120) | intergenic (+31/‑209) | rho/wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 3950444 = | 121 (1.390) | 5 (0.060) | 5/248 | NT | 4.0% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913 | 3950470 = | 126 (1.520) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913 | = 3876111 | 133 (1.520) | 4 (0.050) | 4/242 | NT | 3.1% | intergenic (+17/+29) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913 | = 3876122 | 128 (1.590) | intergenic (+28/+18) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||