mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 58 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4634391 = | 107 (1.140) | 3 (0.030) | 3/250 | NT | 3.1% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 88 (0.990) | coding (627/648 nt) | ytjC | phosphatase | |||||
| * | ? | NC_000913 | 4607519 = | 89 (0.950) | 3 (0.030) | 3/258 | NT | 3.4% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 83 (0.910) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4542690 | 129 (1.380) | 4 (0.050) | 4/246 | NT | 3.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 103 (1.180) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4431564 | 111 (1.190) | 3 (0.030) | 3/256 | NT | 2.6% | coding (420/663 nt) | ytfE | iron‑sulfur cluster repair protein RIC |
| ? | NC_000913 | = 4431575 | 117 (1.290) | coding (409/663 nt) | ytfE | iron‑sulfur cluster repair protein RIC | |||||
| * | ? | NC_000913 | = 4394401 | 83 (0.890) | 3 (0.030) | 3/244 | NT | 3.6% | coding (336/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| ? | NC_000913 | = 4394421 | 84 (0.970) | coding (356/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase | |||||
| * | ? | NC_000913 | 4345941 = | 108 (1.160) | 4 (0.040) | 4/260 | NT | 3.5% | coding (1386/1647 nt) | fumB | anaerobic class I fumarate hydratase (fumarase B) |
| ? | NC_000913 | 4345963 = | 113 (1.230) | coding (1364/1647 nt) | fumB | anaerobic class I fumarate hydratase (fumarase B) | |||||
| * | ? | NC_000913 | = 4343292 | 111 (1.190) | 3 (0.030) | 3/248 | NT | 2.7% | intergenic (+26/‑77) | melA/melB | alpha‑galactosidase, NAD(P)‑binding/melibiose:sodium symporter |
| ? | NC_000913 | = 4343302 | 108 (1.230) | intergenic (+36/‑67) | melA/melB | alpha‑galactosidase, NAD(P)‑binding/melibiose:sodium symporter | |||||
| * | ? | NC_000913 | = 4335653 | 111 (1.190) | 4 (0.050) | 4/236 | NT | 3.7% | intergenic (‑63/+41) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| ? | NC_000913 | = 4335655 | 110 (1.320) | intergenic (‑65/+39) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | 4133088 = | 97 (1.040) | 3 (0.030) | 3/250 | NT | 3.2% | coding (473/891 nt) | metF | 5,10‑methylenetetrahydrofolate reductase |
| ? | NC_000913 | 4133117 = | 89 (1.010) | coding (502/891 nt) | metF | 5,10‑methylenetetrahydrofolate reductase | |||||
| * | ? | NC_000913 | = 4093097 | 108 (1.160) | 3 (0.030) | 3/252 | NT | 2.8% | intergenic (‑274/+27) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase |
| ? | NC_000913 | = 4093109 | 102 (1.140) | intergenic (‑286/+15) | frvA/rhaM | putative enzyme IIA component of PTS/L‑rhamnose mutarotase | |||||