mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,739,764 | 0 | G | T | 50.0% | ‑6.4 / 22.5 | 16 | A12E (GCG→GAG) | ydhB | LysR family putative transcriptional regulator |
| * | NC_000913 | 3,290,959 | 0 | C | A | 50.0% | 1.8 / 37.3 | 26 | L716I (CTC→ATC) | yraJ | putative outer membrane protein |
| * | NC_000913 | 753,691 | 0 | G | T | 41.4% | 21.8 / 32.1 | 29 | L260M (CTG→ATG) | gltA | citrate synthase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.0% | 37.4 / 49.4 | 50 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,474,813 | 1 | . | T | 26.7% | 20.3 / 15.4 | 15 | coding (593/861 nt) | ydbC | putative NAD(P)‑binding oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 9 (0.260) | 9/276 | 2.4 | 15.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3653478 = | 49 (1.430) | pseudogene (248/483 nt) | yhiS | pseudogene | |||||
| * | ? | NC_000913 | 1570598 = | 46 (1.340) | 7 (0.220) | 7/252 | 2.6 | 14.6% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 1570626 = | 40 (1.280) | intergenic (‑137/+19) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent | |||||
| * | ? | NC_000913 | 4426579 = | 47 (1.370) | 4 (0.130) | 4/250 | 3.6 | 8.4% | intergenic (+22/+49) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| ? | NC_000913 | 4426606 = | 45 (1.450) | intergenic (+49/+22) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein | |||||
| * | ? | NC_000913 | = 1825935 | 36 (1.050) | 4 (0.130) | 4/254 | 3.6 | 10.2% | intergenic (‑310/+20) | spy/astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| ? | NC_000913 | = 1825939 | 37 (1.170) | intergenic (‑314/+16) | spy/astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | = 4257742 | 56 (1.630) | 4 (0.120) | 4/262 | 3.7 | 7.1% | coding (1/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | NC_000913 | = 4257754 | 52 (1.590) | coding (13/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
| * | ? | NC_000913 | = 3967987 | 56 (1.630) | 4 (0.120) | 4/258 | 3.7 | 6.9% | coding (72/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967995 | 55 (1.710) | coding (80/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 3970088 = | 33 (0.960) | 4 (0.120) | 4/268 | 3.8 | 10.5% | intergenic (+11/‑45) | wzzE/wecB | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein/UDP‑N‑acetyl glucosamine‑2‑epimerase |
| ? | NC_000913 | 3970114 = | 36 (1.080) | intergenic (+37/‑19) | wzzE/wecB | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein/UDP‑N‑acetyl glucosamine‑2‑epimerase | |||||
| * | ? | NC_000913 | 2835067 = | NA (NA) | 3 (0.090) | 3/262 | 4.1 | NA | noncoding (1/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2835099 = | NA (NA) | noncoding (33/82 nt) | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 2185162 | 41 (1.190) | 3 (0.090) | 3/262 | 4.1 | 7.2% | coding (140/789 nt) | thiM | hydoxyethylthiazole kinase |
| ? | NC_000913 | = 2185172 | 38 (1.170) | coding (130/789 nt) | thiM | hydoxyethylthiazole kinase | |||||
| * | ? | NC_000913 | 1733856 = | 32 (0.930) | 3 (0.090) | 3/262 | 4.1 | 9.2% | coding (246/348 nt) | grxD | glutaredoxin‑4 |
| ? | NC_000913 | 1733899 = | 29 (0.890) | coding (203/348 nt) | grxD | glutaredoxin‑4 | |||||