mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 33 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP025533 | 2,086,244 | 0 | T | G | 51.8% | 61.1 / inf | 245 | G2G (GGA→GGC) | CYL77_09950 | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| * | CP025533 | 2,084,509 | 0 | G | T | 49.8% | 9.8 / inf | 253 | intergenic (‑11/+190) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,510 | 0 | T | A | 49.8% | ‑1.7 / inf | 253 | intergenic (‑12/+189) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,508 | 0 | G | T | 49.6% | 34.5 / inf | 253 | intergenic (‑10/+191) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,420,708 | 0 | T | C | 41.0% | 380.1 / inf | 257 | P455P (CCT→CCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,710 | 0 | C | T | 40.7% | 372.4 / inf | 258 | A456V (GCT→GTT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,717 | 0 | A | C | 40.6% | 422.5 / inf | 256 | G458G (GGA→GGC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,723 | 0 | G | A | 39.0% | 398.5 / inf | 254 | V460V (GTG→GTA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,726 | 0 | G | T | 39.0% | 460.6 / inf | 254 | G461G (GGG→GGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,733 | 0 | C | T | 38.5% | 388.3 / inf | 252 | P464S (CCA→TCA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,737 | 0 | T | C | 37.4% | 398.2 / 289.5 | 239 | V465A (GTG→GCG) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,738 | 0 | G | A | 37.4% | 407.6 / 306.5 | 239 | V465V (GTG→GTA) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,739 | 0 | G | A | 37.2% | 414.2 / 309.1 | 239 | G466S (GGT→AGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,647 | 0 | A | C | 33.8% | 389.6 / 271.4 | 201 | P272P (CCA→CCC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 2,420,781 | 0 | A | C | 33.6% | 521.3 / 305.5 | 226 | S480R (AGT→CGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,828 | 0 | C | G | 33.6% | 516.8 / 282.8 | 223 | P495P (CCC→CCG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,786 | 0 | G | C | 33.5% | 534.6 / 294.3 | 224 | S481S (TCG→TCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,810 | 0 | A | G | 33.5% | 475.5 / 242.5 | 224 | K489K (AAA→AAG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,671 | 0 | A | C | 32.6% | 408.8 / 253.0 | 197 | R280R (CGA→CGC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 1,177,116 | 0 | T | C | 31.4% | 220.7 / 40.0 | 122 | P260P (CCA→CCG) | kgd | 2‑oxoglutarate dehydrogenase E1/E2 component |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP025533 | = 497710 | 122 (0.920) | 8 (0.090) | 8/346 | 15.2 | 8.5% | intergenic (+2/‑251) | CYL77_02460/CYL77_02465 | tRNA‑Thr/tRNA‑Thr |
| ? | CP025533 | 498036 = | 88 (0.950) | intergenic (+3/‑36) | CYL77_02465/CYL77_02470 | tRNA‑Thr/tRNA‑Met | |||||
| * | ? | CP025533 | = 1777474 | 121 (0.910) | 4 (0.040) | 4/342 | 18.4 | 4.4% | intergenic (‑3/+31) | CYL77_08470/CYL77_08475 | tRNA‑Gly/tRNA‑Val |
| ? | CP025533 | 1777992 = | 92 (1.000) | intergenic (‑4/‑344) | CYL77_08495/CYL77_08500 | tRNA‑Gly/tRNA‑Val | |||||