mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 699,722 | 0 | A | G | 61.8% | 6.6 / 32.6 | 34 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | AE015451 | 4,974,439 | 0 | G | . | 51.8% | 41.4 / 65.6 | 27 | coding (1165/2043 nt) | flgK | Flagellar hook‑associated protein FlgK |
| * | AE015451 | 4,974,438 | 0 | A | . | 48.3% | 54.1 / 54.3 | 29 | coding (1166/2043 nt) | flgK | Flagellar hook‑associated protein FlgK |
| * | AE015451 | 1,327,121 | 0 | C | T | 47.5% | 32.6 / 90.6 | 61 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | AE015451 | 4,348,705 | 0 | A | G | 46.9% | 10.0 / 43.6 | 32 | intergenic (‑70/+404) | PP_3820/galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | AE015451 | 4,964,454 | 0 | C | T | 44.0% | 1.8 / 28.8 | 25 | D302N (GAC→AAC) | fleQ | Transcriptional regulator FleQ |
| * | AE015451 | 1,843,901 | 0 | C | T | 36.0% | 20.8 / 23.2 | 25 | R298H (CGC→CAC) | gacS | Sensor protein GacS |
| * | AE015451 | 5,988,809 | 0 | G | A | 35.3% | 9.5 / 13.5 | 17 | intergenic (+103/‑443) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | AE015451 | 1,530,173 | 0 | A | C | 33.3% | 20.1 / 15.7 | 18 | *399S (TAA→TCA) noncoding (62/244 nt) | ftsZ PP_mr19 | Cell division protein FtsZ Xoo8 ncRNA |
| * | AE015451 | 4,583,571 | 0 | G | . | 30.8% | 24.1 / 10.2 | 13 | intergenic (‑144/+27) | treSB/glgE | fused trehalose synthase B/maltokinase/Alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| * | AE015451 | 5,988,911 | 0 | A | . | 22.2% | 48.1 / 10.2 | 18 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | AE015451 | 197,572 | 0 | G | A | 20.0% | 58.9 / 11.2 | 30 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 2472115 | 18 (0.800) | 3 (0.140) | 3/302 | 2.6 | 16.1% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 14 (0.650) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||