mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 46.2% | 71.2 / 257.0 | 176 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 422,429 | 0 | T | G | 23.6% | 344.1 / 18.8 | 148 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 1,708,901 | 0 | A | C | 21.7% | 133.6 / 14.0 | 87 | R661R (CGA→CGC) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 1,708,751 | 0 | A | G | 21.1% | 56.7 / 10.1 | 39 | E611E (GAA→GAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 1,708,709 | 0 | T | A | 20.8% | 75.1 / 22.1 | 61 | R597R (CGT→CGA) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 422,435 | 0 | T | G | 20.7% | 386.8 / 10.8 | 148 | intergenic (+76/‑83) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 59 (0.240) | 61 (0.270) +GAAGAAACAATC |
22/268 | 19.3 | 30.1% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 250 (1.000) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | = 2357873 | 158 (0.630) | 28 (0.110) | 23/292 | 20.2 | 14.8% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 165 (0.660) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | U00096 | = 1287084 | 60 (0.240) | 31 (0.140) | 17/252 | 20.7 | 19.1% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 210 (0.970) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 133 (0.530) | 69 (0.280) +G |
17/290 | 22.8 | 42.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 57 (0.230) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287262 | 119 (0.470) | 14 (0.070) | 12/250 | 23.3 | 11.6% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 112 (0.520) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | = 4542690 | 307 (1.220) | 11 (0.050) | 11/274 | 25.3 | 3.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 302 (1.280) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 4542682 = | 310 (1.240) | 11 (0.050) | 10/274 | 26.0 | 3.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 305 (1.300) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781577 = | 141 (0.560) | 111 (0.450) +G |
11/290 | 26.2 | 53.0% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 57 (0.230) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 295 (1.180) | 62 (0.250) +G |
11/290 | 26.2 | 26.2% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 57 (0.230) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 2818077 | 204 (0.810) | 5 (0.020) | 5/252 | 28.5 | 2.9% | noncoding (59/77 nt) | argZ | tRNA‑Arg |
| ? | U00096 | 2818358 = | 158 (0.730) | intergenic (‑84/+115) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||