mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 49.2% | 14.2 / 100.5 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 2,947,591 | 0 | A | . | 28.0% | 60.2 / 22.3 | 25 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 380,013 | 0 | G | . | 22.6% | 84.3 / 21.8 | 32 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 23 (0.260) | 25 (0.310) +GAAGAAACAATC |
11/266 | 8.0 | 35.7% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 75 (0.850) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 4542682 = | 125 (1.420) | 9 (0.110) | 9/272 | 9.0 | 6.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 138 (1.670) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 123 (1.400) | 9 (0.110) | 8/272 | 9.4 | 6.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 137 (1.660) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 3928062 = | 59 (0.670) | 3 (0.040) | 3/272 | 12.4 | 5.0% | coding (908/993 nt) | asnA | asparagine synthetase A |
| ? | U00096 | = 3928058 | 58 (0.700) | coding (904/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | U00096 | = 3118881 | 64 (0.730) | 3 (0.040) | 3/272 | 12.4 | 4.8% | coding (232/4563 nt) | yghJ | putative lipoprotein YghJ |
| ? | U00096 | 3118960 = | 59 (0.710) | coding (153/4563 nt) | yghJ | putative lipoprotein YghJ | |||||
| * | ? | U00096 | 1247338 = | 104 (1.180) | 3 (0.030) | 3/288 | 12.8 | 3.2% | coding (39/1698 nt) | treA | periplasmic trehalase |
| ? | U00096 | 1359463 = | 79 (0.900) | intergenic (‑122/+27) | ymjE/puuA | protein YmjE/glutamate‑putrescine ligase | |||||
| * | ? | U00096 | = 2357873 | 69 (0.780) | 4 (0.050) | 3/290 | 12.9 | 5.5% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 69 (0.780) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||