mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 690,144 | A→G | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 690,150 | T→G | intergenic (+27/‑2432) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 1,998,653 | G→A | I48I (ATC→ATT) | CJ019_01900 ← | hypothetical protein |
| RA | 3,061,793 | G→A | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,957,251 | G→A | P133L (CCG→CTG) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 4,223,606 | G→A | L83L (CTG→TTG) | CJ019_03962 ← | hypothetical protein |
| RA | 5,757,239 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87934 | 88060 | 127 | 29 [27] | [25] 32 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 517190 | 517306 | 117 | 37 [21] | [26] 32 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 1914543 | 1914695 | 153 | 28 [27] | [27] 29 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | KT2440 | 2288847 | 2288949 | 103 | 28 [27] | [22] 28 | [CJ019_02172] | [CJ019_02172] |
| * | * | ÷ | KT2440 | 3046177 | 3046363 | 187 | 28 [25] | [25] 28 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3769398 | 3769508 | 111 | 28 [26] | [26] 29 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 4163749 | 4163891 | 143 | 33 [27] | [27] 28 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4333651 | 4333790 | 140 | 28 [26] | [27] 31 | [ribBA_2] | [ribBA_2] |
| * | * | ÷ | KT2440 | 4668911 | 4669028 | 118 | 28 [27] | [18] 30 | [btuB_4] | [btuB_4] |
| * | * | ÷ | KT2440 | 4734423 | 4734522 | 100 | 30 [27] | [26] 28 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | KT2440 | 4846179 | 4846352 | 174 | 29 [25] | [27] 28 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 5193435 | 5193559 | 125 | 34 [25] | [25] 29 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5250599 | 5250729 | 131 | 44 [26] | [27] 32 | [CJ019_04947]–[CJ019_04948] | [CJ019_04947],[CJ019_04948] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 0 (0.000) | 119 (1.650) | 45/252 | 0.2 | 100% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 71 (0.980) | 41/254 | 0.3 | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||