mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,214,846 | 0 | C | G | 55.1% | 33.7 / 106.0 | 69 | H600Q (CAC→CAG) | rpoD | RNA polymerase sigma factor RpoD |
| * | NC_000913 | 3,213,434 | 0 | G | A | 35.0% | 61.4 / 53.5 | 60 | V130I (GTT→ATT) | rpoD | RNA polymerase sigma factor RpoD |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.6% | 32.1 / 16.4 | 27 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1031765 = | 26 (0.520) | 5 (0.100) | 5/396 | 4.2 | 16.7% | intergenic (‑53/‑374) | serT/hyaA | tRNA‑Ser/hydrogenase 1 small subunit |
| ? | NC_000913 | = 1031760 | 25 (0.520) | intergenic (‑48/‑379) | serT/hyaA | tRNA‑Ser/hydrogenase 1 small subunit | |||||
| * | ? | NC_000913 | 1822856 = | 57 (1.140) | 3 (0.060) | 3/398 | 5.1 | 5.6% | coding (399/828 nt) | nadE | NH3‑dependent NAD(+) synthetase |
| ? | NC_000913 | = 3500032 | 47 (0.970) | coding (123/1338 nt) | frlA | fructoselysine/psicoselysine transporter | |||||
| * | ? | NC_000913 | = 2399621 | 40 (0.800) | 3 (0.060) | 3/406 | 5.2 | 7.5% | coding (545/2727 nt) | nuoG | NADH:quinone oxidoreductase subunit G |
| ? | NC_000913 | 4209631 = | 35 (0.710) | noncoding (1485/1542 nt) | rrsE | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2399621 | 40 (0.800) | 3 (0.060) | 3/406 | 5.2 | 8.5% | coding (545/2727 nt) | nuoG | NADH:quinone oxidoreductase subunit G |
| ? | NC_000913 | 3943292 = | 25 (0.510) | noncoding (1485/1542 nt) | rrsC | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2171428 | NA (NA) | 4 (0.080) | 3/408 | 5.2 | 6.6% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 3625695 = | 57 (1.150) | coding (1109/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
| * | ? | NC_000913 | 580963 = | 56 (1.120) | 3 (0.060) | 3/408 | 5.2 | 5.4% | coding (130/546 nt) | nohD | putative DNA‑packaging protein NohD |
| ? | NC_000913 | = 3718762 | 49 (0.990) | coding (283/711 nt) | yiaF | DUF3053 domain‑containing protein YiaF | |||||
| * | ? | NC_000913 | = 402412 | 50 (1.000) | 3 (0.060) | 3/408 | 5.2 | 5.3% | coding (666/1416 nt) | phoA | alkaline phosphatase |
| ? | NC_000913 | = 3565759 | 58 (1.170) | coding (823/2448 nt) | glgP | glycogen phosphorylase | |||||