mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 150 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,634,023 | 0 | A | T | 70.0% | 10.7 / 14.0 | 20 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 580,429 | 0 | A | G | 66.7% | 9.6 / 11.0 | 18 | I125V (ATT→GTT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,941,090 | 0 | T | C | 66.1% | 50.3 / 116.8 | 124 | noncoding (34/76 nt) | gltU | tRNA‑Val |
| * | NC_000913 | 580,498 | 0 | G | A | 65.5% | 16.7 / 20.0 | 29 | V148I (GTT→ATT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,620,219 | 0 | A | G | 61.5% | 61.2 / 100.2 | 96 | M1133V (ATG→GTG) | rhsB | RhsB |
| * | NC_000913 | 3,725,739 | 2 | . | C | 60.9% | 120.6 / 91.7 | 64 | coding (1262/1455 nt) | xylB | xylulokinase |
| * | NC_000913 | 3,192,873 | 0 | T | C | 59.6% | 128.2 / inf | 313 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,634,026 | 0 | T | G | 58.3% | 21.9 / 25.1 | 24 | A122A (GCA→GCC) | nohA | NohA |
| * | NC_000913 | 1,634,029 | 0 | G | C | 56.0% | 23.4 / 34.6 | 25 | I121M (ATC→ATG) | nohA | NohA |
| * | NC_000913 | 3,192,891 | 0 | C | T | 56.0% | 193.3 / inf | 326 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,723 | 1 | . | G | 55.9% | 436.7 / inf | 247 | intergenic (+182/+238) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,425 | 0 | T | A | 55.6% | 30.8 / 38.0 | 28 | G123G (GGT→GGA) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,509 | 0 | G | C | 55.4% | 59.6 / 83.6 | 56 | L151L (CTG→CTC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,192,907 | 0 | A | T | 53.7% | 106.1 / inf | 324 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,512 | 0 | A | G | 53.4% | 56.0 / 74.1 | 58 | K152K (AAA→AAG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 3,192,905 | 0 | C | A | 52.5% | 39.5 / inf | 316 | intergenic (+364/+56) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,411 | 0 | A | C | 52.4% | 114.3 / inf | 268 | N197H (AAC→CAC) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,410 | 0 | C | T | 52.2% | 96.0 / inf | 270 | L196L (CTC→CTT) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,436 | 0 | A | G | 51.5% | 12.1 / inf | 237 | L6L (CTA→CTG) | yecE | hypothetical protein |
| * | NC_000913 | 1,949,356 | 0 | T | C | 48.9% | 52.6 / inf | 268 | S178S (AGT→AGC) | yecD | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008398 | 63 (0.350) | 56 (0.320) +AAGA |
21/172 | 4.2 | 47.9% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 63 (0.350) | coding (482/516 nt) | b4555 | hypothetical protein | |||||