mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 2,296,329 | 0 | A | C | 36.8% | 92.0 / 20.5 | 57 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 2,631,772 | 0 | A | C | 29.1% | 117.6 / 14.5 | 55 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,484,105 | 0 | A | G | 27.5% | 67.9 / 14.4 | 40 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,417,495 | 0 | T | A | 21.4% | 112.4 / 10.1 | 42 | L24F (TTA→TTT) | emrK | EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3021053 | 73 (1.580) | 8 (0.200) | 6/132 | 3.8 | 12.0% | coding (431/933 nt) | ECB_02820 | hypothetical protein |
| ? | REL606 | = 3021314 | 53 (1.300) | coding (170/933 nt) | ECB_02820 | hypothetical protein | |||||
| * | ? | REL606 | 2042218 = | 56 (1.210) | 6 (0.150) | 6/134 | 3.8 | 10.5% | coding (603/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042455 = | 52 (1.260) | coding (366/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 3026635 = | 60 (1.290) | 5 (0.130) | 5/128 | 4.0 | 7.9% | coding (168/1377 nt) | ECB_02826 | hypothetical protein |
| ? | REL606 | 3026802 = | 65 (1.650) | coding (1/1377 nt) | ECB_02826 | hypothetical protein | |||||
| * | ? | REL606 | = 3553762 | 87 (1.880) | 6 (0.140) | 5/138 | 4.3 | 6.9% | coding (3883/4236 nt) | rhsB | rhsB element core protein RshB |
| ? | REL606 | = 3553969 | 83 (1.950) | coding (4090/4236 nt) | rhsB | rhsB element core protein RshB | |||||
| * | ? | REL606 | 2037848 = | 43 (0.930) | 7 (0.160) | 5/140 | 4.3 | 13.6% | coding (283/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038306 = | 49 (1.130) | coding (643/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | = 2042274 | 82 (1.770) | 6 (0.150) | 4/134 | 4.6 | 7.9% | coding (547/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | = 2042743 | 66 (1.600) | coding (78/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2038934 = | 44 (0.950) | 8 (0.190) | 4/136 | 4.6 | 15.9% | coding (15/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039357 = | 45 (1.070) | coding (338/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2038140 = | 34 (0.730) | 5 (0.120) | 4/134 | 4.6 | 9.8% | coding (809/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2038515 = | 62 (1.500) | coding (434/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | = 3582336 | 81 (1.750) | 4 (0.090) | 4/140 | 4.7 | 5.7% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 56 (1.300) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | 3021732 = | 57 (1.230) | 10 (0.230) | 4/138 | 4.7 | 14.0% | coding (953/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022271 = | 71 (1.670) | coding (414/1140 nt) | ECB_02821 | hypothetical protein | |||||