mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 33 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,742,599 | 0 | C | . | 65.7% | 31.8 / 51.9 | 35 | intergenic (‑67/‑134) | yiaJ/yiaK | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent |
| * | NC_000913 | 3,676,878 | 0 | G | A | 58.2% | 17.5 / 62.9 | 55 | P491P (CCC→CCT) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein |
| * | NC_000913 | 2,857,144 | 0 | C | T | 54.5% | ‑6.4 / 17.4 | 13 | L18F (CTC→TTC) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,141 | 1 | . | G | 53.8% | 19.5 / 18.7 | 13 | coding (49/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,145 | 0 | T | A | 53.8% | ‑3.8 / 17.0 | 13 | L18H (CTC→CAC) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,146 | 0 | C | G | 53.8% | ‑2.8 / 19.6 | 13 | L18L (CTC→CTG) ‡ | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,147 | 0 | A | T | 53.8% | 17.0 / 18.3 | 13 | coding (55/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,148 | 0 | G | C | 53.8% | 18.7 / 18.9 | 13 | coding (56/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 1,286,965 | 0 | A | G | 52.8% | ‑3.4 / 41.8 | 36 | intergenic (+439/+101) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| * | NC_000913 | 4,296,060 | 0 | C | T | 50.0% | 5.3 / 39.8 | 32 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,628,775 | 0 | G | A | 46.7% | 13.6 / 52.4 | 45 | A255V (GCG→GTG) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| * | NC_000913 | 2,857,142 | 0 | A | G | 46.2% | ‑5.5 / 13.4 | 13 | Y17C (TAT→TGT) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 2,857,143 | 0 | T | A | 46.2% | 1.7 / 12.9 | 13 | Y17* (TAT→TAA) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 3,647,481 | 0 | T | C | 42.7% | 17.5 / 94.0 | 75 | C395R (TGC→CGC) | gor | glutathione oxidoreductase |
| * | NC_000913 | 2,857,143 | 1 | . | A | 38.5% | 0.6 / 20.1 | 13 | coding (51/2562 nt) | mutS | methyl‑directed mismatch repair protein |
| * | NC_000913 | 566,245 | 0 | G | A | 37.7% | 57.7 / 54.9 | 61 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,277 | 0 | C | T | 35.9% | 68.0 / 53.4 | 64 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 3,728,110 | 1 | . | C | 35.9% | 43.9 / 84.2 | 53 | coding (1262/1455 nt) | xylB | xylulokinase |
| * | NC_000913 | 1,287,039 | 0 | T | G | 35.3% | 26.4 / 18.7 | 17 | intergenic (+513/+27) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| * | NC_000913 | 1,287,041 | 0 | A | G | 35.3% | 16.1 / 11.9 | 17 | intergenic (+515/+25) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |