mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 4517801 = | 154 (0.920) | 4 (0.020) | 3/428 | NT | 2.6% | coding (289/999 nt) | fecC | iron‑dicitrate ABC transporter permease FecC |
| ? | NC_007779 | 4518009 = | 152 (0.920) | coding (81/999 nt) | fecC | iron‑dicitrate ABC transporter permease FecC | |||||
| * | ? | NC_007779 | 4299443 = | 212 (1.260) | 8 (0.050) +TT |
5/430 | NT | 3.5% | intergenic (+59/+472) | gltP/Y75_RS21270 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| ? | NC_007779 | = 4299892 | 235 (1.400) | intergenic (+508/+23) | gltP/Y75_RS21270 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein | |||||
| * | ? | NC_007779 | = 4001888 | 175 (1.040) | 3 (0.020) | 3/418 | NT | 1.8% | coding (886/1500 nt) | pitA | inorganic phosphate transporter PitA |
| ? | NC_007779 | = 4002033 | 155 (0.960) | coding (741/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
| * | ? | NC_007779 | = 3898201 | 223 (1.330) | 7 (0.040) | 3/408 | NT | 3.0% | coding (319/849 nt) | yiaJ | IclR family transcriptional regulator YiaJ |
| ? | NC_007779 | = 3898501 | 243 (1.540) | coding (619/849 nt) | yiaJ | IclR family transcriptional regulator YiaJ | |||||
| * | ? | NC_007779 | 3869484 = | 167 (1.000) | 3 (0.020) | 3/418 | NT | 1.8% | coding (449/1137 nt) | Y75_RS19200 | HlyD family secretion protein |
| ? | NC_007779 | 3869767 = | 159 (0.980) | coding (732/1137 nt) | Y75_RS19200 | HlyD family secretion protein | |||||
| * | ? | NC_007779 | 3792909 = | 87 (0.520) | 3 (0.020) | 3/420 | NT | 2.8% | coding (1119/1320 nt) | uhpC | MFS transporter family glucose‑6‑phosphate receptor UhpC |
| ? | NC_007779 | 3793034 = | 122 (0.750) | coding (1244/1320 nt) | uhpC | MFS transporter family glucose‑6‑phosphate receptor UhpC | |||||
| * | ? | NC_007779 | 3759688 = | 201 (1.200) | 6 (0.040) | 5/414 | NT | 3.0% | coding (495/1074 nt) | recF | DNA replication/repair protein RecF |
| ? | NC_007779 | 3759770 = | 193 (1.210) | coding (577/1074 nt) | recF | DNA replication/repair protein RecF | |||||
| * | ? | NC_007779 | 3699250 = | 246 (1.470) | 4 (0.020) | 4/418 | NT | 1.9% | coding (138/930 nt) | rbsK | ribokinase |
| ? | NC_007779 | 3699772 = | 170 (1.050) | coding (632/891 nt) | rbsB | ribose ABC transporter substrate‑binding protein RbsB | |||||
| * | ? | NC_007779 | 3474149 = | 196 (1.170) | 4 (0.020) | 4/422 | NT | 2.2% | coding (739/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_007779 | 3474172 = | 160 (0.980) | coding (762/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
| * | ? | NC_007779 | 3376017 = | 141 (0.840) | 3 (0.020) | 3/422 | NT | 2.1% | coding (1294/1368 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC |
| ? | NC_007779 | 3376143 = | 137 (0.840) | coding (489/498 nt) | sspB | ClpXP protease specificity‑enhancing factor | |||||