mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,439 | A→C | 17.7% | H69P (CAC→CCC) | Y75_RS00030 → | DUF2502 domain‑containing protein |
| RA | 8,698 | A→G | 100% | N154S (AAC→AGC) | tal → | transaldolase |
| RA | 8,972 | A→G | 100% | A245A (GCA→GCG) | tal → | transaldolase |
| RA | 19,427 | A→G | 30.0% | N236S (AAT→AGT) | nhaR → | transcriptional activator NhaR |
| RA | 19,523 | A→G | 100% | Y268C (TAC→TGC) | nhaR → | transcriptional activator NhaR |
| RA | 21,017 | T→C | 6.6% | N21S (AAC→AGC) | rpsT ← | 30S ribosomal protein S20 |
| RA | 56,379 | T→G | 12.1% | Y244S (TAC→TCC) | lptD ← | LPS assembly protein LptD |
| RA | 73,407 | T→C | 11.3% | E372G (GAG→GGG) | thiP ← | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| RA | 75,079 | C→T | 20.1% | L134L (CTG→CTA) | thiB ← | thiamine ABC transporter substrate binding subunit |
| RA | 82,766 | A→G | 7.6% | L255P (CTC→CCC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 119,148 | C→G | 9.6% | A139G (GCA→GGA) | ampD → | 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD |
| RA | 119,388 | A→G | 8.7% | K36K (AAA→AAG) | ampE → | beta‑lactamase regulator AmpE |
| RA | 152,161 | A→G | 40.2% | V24A (GTA→GCA) | yadL ← | fimbrial‑like protein YadL |
| RA | 160,542 | T→C | 100% | E21E (GAA→GAG) | Y75_RS00735 ← | RNA polymerase‑binding protein DksA |
| RA | 176,773 | T→G | 7.7% | V55G (GTG→GGG) | erpA → | iron‑sulfur cluster insertion protein ErpA |
| RA | 179,350 | T→C | 100% | R38R (CGT→CGC) | dgt → | dGTPase |
| RA | 228,688 | Δ1 bp | 100% | intergenic (+9/‑70) | Y75_RS01035 → / → rrf | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 245,321 | A→G | 100% | L162P (CTG→CCG) | Y75_RS01145 ← | murein L,D‑transpeptidase |
| RA | 265,219 | A→C | 13.7% | G31G (GGT→GGG) | Y75_RS01275 ← | hypothetical protein |
| RA | 265,233 | A→C | 14.6% | F27V (TTC→GTC) | Y75_RS01275 ← | hypothetical protein |
| RA | 267,754 | T→C | 100% | Y144C (TAC→TGC) | Y75_RS01295 ← | GTPase family protein |
| RA | 275,552 | T→C | 100% | V335A (GTG→GCG) | mmuP → | S‑methylmethionine permease |
| RA | 300,601 | A→C | 8.5% | L171V (TTG→GTG) | Y75_RS01475 ← | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| RA | 332,215 | G→T | 14.2% | L207F (TTG→TTT) | Y75_RS01630 → | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| RA | 344,526 | C→A | 16.4% | intergenic (+311/‑102) | Y75_RS01685 → / → Y75_RS01690 | hypothetical protein/hypothetical protein |
| RA | 352,830 | A→G | 15.2% | M301V (ATG→GTG) | prpE → | propionate‑‑CoA ligase |
| RA | 359,586 | T→G | 19.1% | V133G (GTG→GGG) | cynX → | cyanate transporter CynX |
| RA | 359,594 | C→G | 7.5% | L136V (CTG→GTG) | cynX → | cyanate transporter CynX |
| RA | 363,258 | G→T | 6.2% | Q758K (CAA→AAA) | Y75_RS01770 ← | beta‑galactosidase |
| RA | 365,732 | G→T | 14.6% | Q335K (CAA→AAA) | Y75_RS01775 ← | DNA‑binding transcriptional repressor LacI |
| RA | 374,269 | G→A | 5.2% | intergenic (+164/‑414) | dmpG → / → Y75_RS01815 | 4‑hydroxy‑2‑oxovalerate aldolase/3‑(3‑hydroxy‑phenyl)propionate transporter |
| RA | 392,802 | A→G | 6.9% | pseudogene (603/1443 nt) | Y75_RS01915 → | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | 422,258 | A→G | 100% | T174A (ACG→GCG) | malZ → | maltodextrin glucosidase |
| RA | 432,873 | T→G | 33.8% | G65G (GGT→GGG) | ribD → | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| RA | 446,901 | G→T | 11.0% | T10K (ACG→AAG) | cyoE ← | protoheme IX farnesyltransferase |
| RA | 474,969 | A→G | 23.3% | T123A (ACC→GCC) | Y75_RS02330 → | hypothetical protein |
| RA | 497,850 | T→C | 10.8% | L191P (CTC→CCC) | hemH → | ferrochelatase |
| RA | 501,700 | A→G | 100% | F255L (TTC→CTC) | Y75_RS02460 ← | Kef family K(+) transporter |
| RA | 537,594 | C→G | 12.3% | S246R (AGC→AGG) | Y75_RS02615 → | putative allantoin permease |
| RA | 537,607 | A→T | 11.5% | T251S (ACG→TCG) | Y75_RS02615 → | putative allantoin permease |
| RA | 547,694 | A→G | 100% | E38E (GAA→GAG) | Y75_RS02655 → | hypothetical protein |
| RA | 547,831:1 | +G | 100% | coding (251/261 nt) | Y75_RS02655 → | hypothetical protein |
| RA | 550,454 | A→G | 12.6% | S265G (AGT→GGT) | Y75_RS02670 → | carbamate kinase |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| RA | 595,716 | C→G | 9.8% | G298G (GGC→GGG) | cusC → | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC |
| RA | 595,722 | A→C | 12.2% | A300A (GCA→GCC) | cusC → | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC |
| RA | 601,858 | A→G | 15.1% | E226G (GAG→GGG) | pheP → | phenylalanine transporter |
| RA | 616,788 | T→C | 45.0% | Y1137H (TAT→CAT) | entF → | enterobactin non‑ribosomal peptide synthetase EntF |
| RA | 627,875 | T→G | 8.8% | G34G (GGT→GGG) | dhbA → | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| RA | 629,410 | A→G | 10.0% | G98G (GGA→GGG) | cstA → | carbon starvation protein CstA |
| RA | 645,964 | C→T | 6.7% | A257T (GCC→ACC) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| RA | 647,873 | T→C | 100% | T308A (ACC→GCC) | citF ← | citrate lyase subunit alpha |
| RA | 649,967 | A→G | 100% | S14P (TCT→CCT) | citD ← | citrate lyase acyl carrier protein |
| RA | 658,072 | C→A | 13.4% | G97C (GGC→TGC) | crcB ← | fluoride efflux transporter CrcB |
| RA | 658,098 | A→C | 21.6% | V88G (GTG→GGG) | crcB ← | fluoride efflux transporter CrcB |
| RA | 663,570 | A→G | 100% | R272R (CGT→CGC) | dacA ← | D‑alanyl‑D‑alanine carboxypeptidase DacA |
| RA | 693,319 | T→C | 10.7% | E174G (GAG→GGG) | Y75_RS03425 ← | PhoH family protein |
| RA | 717,946 | T→C | 13.3% | I248V (ATT→GTT) | potE ← | putrescine‑ornithine antiporter |
| RA | 718,961 | T→C | 100% | E641G (GAA→GGA) | speF ← | ornithine decarboxylase SpeF |
| RA | 728,912 | C→A | 12.3% | L81F (TTG→TTT) | kdpA ← | potassium‑transporting ATPase subunit KdpA |
| RA | 762,477 | T→C | 11.4% | R178R (CGT→CGC) | odhB → | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| RA | 773,431 | A→G | 28.0% | T518A (ACT→GCT) | cydA → | cytochrome ubiquinol oxidase subunit I |
| RA | 783,159 | A→G | 13.8% | Y218C (TAC→TGC) | nadA → | quinolinate synthase NadA |
| RA | 783,715 | A→G | 8.4% | E43G (GAG→GGG) | Y75_RS03920 → | nicotinamide riboside transporter PnuC |
| RA | 798,640 | A→G | 100% | Y72H (TAT→CAT) | Y75_RS04000 ← | bifunctional pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 812,143 | T→G | 23.7% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase BioC |
| RA | 821,688 | A→G | 100% | E158E (GAA→GAG) | Y75_RS04105 → | Bax inhibitor‑1/YccA family protein |
| RA | 837,003 | Δ1 bp | 100% | coding (231/1086 nt) | Y75_RS04175 → | hydroxycarboxylate dehydrogenase HcXB |
| RA | 838,200 | C→T | 100% | A50T (GCC→ACC) | Y75_RS04180 ← | DUF1471 domain‑containing protein |
| RA | 910,815 | T→C | 7.7% | L219L (TTA→TTG) | poxB ← | ubiquinone‑dependent pyruvate dehydrogenase |
| RA | 912,676 | T→C | 100% | T521A (ACA→GCA) | hcp ← | hydroxylamine reductase |
| RA | 944,418 | A→G | 24.4% | T195A (ACC→GCC) | dmsB → | dimethylsulfoxide reductase subunit B |
| RA | 948,653 | A→G | 100% | T335A (ACC→GCC) | Y75_RS04680 → | amino acid permease |
| RA | 954,782 | T→A | 13.8% | Y36F (TAT→TTT) | focA ← | formate transporter FocA |
| RA | 954,796 | C→G | 22.5% | P31P (CCG→CCC) | focA ← | formate transporter FocA |
| RA | 959,499 | A→G | 13.6% | E89G (GAG→GGG) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 965,122 | A→G | 5.4% | Q127Q (CAA→CAG) | Y75_RS04750 → | ComEC family protein |
| RA | 970,634 | C→T | 100% | A275V (GCG→GTG) | ycaQ → | winged helix DNA‑binding protein YcaQ |
| RA | 975,783 | A→G | 8.9% | Y348C (TAC→TGC) | mukF → | chromosome partition protein MukF |
| RA | 981,675 | T→G | 16.4% | G69G (GGT→GGG) | ldtD → | L,D‑transpeptidase |
| RA | 986,789 | C→T | 8.4% | G206S (GGC→AGC) | ompF ← | porin OmpF |
| RA | 990,365 | T→G | 26.1% | S138S (TCA→TCC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 990,394 | T→A | 12.3% | I129F (ATC→TTC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 990,816 | A→G | 100% | intergenic (‑38/‑228) | pncB ← / → pepN | nicotinate phosphoribosyltransferase/aminopeptidase N |
| RA | 1,005,273 | T→C | 27.0% | R28R (CGT→CGC) | pyrD → | quinone‑dependent dihydroorotate dehydrogenase |
| RA | 1,009,414 | T→C | 9.3% | T383T (ACT→ACC) | rlmKL → | bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL |
| RA | 1,026,432 | C→T | 100% | R514W (CGG→TGG) | helD → | DNA helicase IV |
| RA | 1,040,392 | T→G | 14.9% | G225G (GGT→GGG) | appB → | cytochrome d ubiquinol oxidase subunit II |
| RA | 1,058,908 | T→C | 13.4% | S135P (TCG→CCG) | torC → | pentaheme c‑type cytochrome TorC |
| RA | 1,065,700 | C→T | 100% | R415C (CGT→TGT) | Y75_RS05220 → | YccE family protein |
| RA | 1,079,081 | T→G | 11.1% | H75P (CAC→CCC) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | 1,080,315 | G→T | 7.4% | A197S (GCC→TCC) | putP → | sodium/proline symporter PutP |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | Y75_RS05355 → | GGDEF domain‑containing protein |
| RA | 1,126,189 | C→T | 100% | A239T (GCT→ACT) | mdtH ← | multidrug efflux MFS transporter MdtH |
| RA | 1,163,018 | T→G | 7.2% | A37A (GCA→GCC) | fhuE ← | ferric‑rhodotorulic acid/ferric‑coprogen receptor FhuE |
| RA | 1,174,783 | T→G | 11.3% | L253F (TTA→TTC) | mfd ← | transcription‑repair coupling factor |
| RA | 1,185,092 | C→A | 8.1% | G36C (GGC→TGC) | potC ← | spermidine/putrescine ABC transporter permease PotC |
| RA | 1,216,504 | T→C | 14.9% | L183L (TTA→TTG) | bluF ← | blue light‑responsive regulator BluF |
| RA | 1,219,107 | A→G | 16.1% | N68S (AAC→AGC) | Y75_RS06095 → | cyclic diguanylate phosphodiesterase |
| RA | 1,234,093 | T→A | 9.0% | D172V (GAT→GTT) | dsbB ← | disulfide bond formation protein DsbB |
| RA | 1,260,091:1 | +T | 100% | intergenic (‑1/‑277) | pth ← / → ychH | aminoacyl‑tRNA hydrolase/stress‑induced protein YchH |
| RA | 1,260,573 | T→G | 13.8% | V69G (GTG→GGG) | ychH → | stress‑induced protein YchH |
| RA | 1,270,808 | T→C | 7.3% | A15A (GCA→GCG) | Y75_RS06360 ← | small toxic polypeptide LdrA/LdrC |
| RA | 1,270,827 | A→G | 5.7% | I9T (ATT→ACT) | Y75_RS06360 ← | small toxic polypeptide LdrA/LdrC |
| RA | 1,271,028 | G→T | 5.1% | intergenic (‑176/+252) | Y75_RS06360 ← / ← Y75_RS06365 | small toxic polypeptide LdrA/LdrC/small toxic polypeptide LdrB |
| RA | 1,271,051 | A→T | 5.8% | intergenic (‑199/+229) | Y75_RS06360 ← / ← Y75_RS06365 | small toxic polypeptide LdrA/LdrC/small toxic polypeptide LdrB |
| RA | 1,273,404 | A→T | 21.2% | V8E (GTA→GAA) | chaA ← | sodium‑potassium/proton antiporter ChaA |
| RA | 1,273,462 | T→A | 8.7% | intergenic (‑36/‑234) | chaA ← / → chaB | sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB |
| RA | 1,284,989 | T→C | 100% | G1183G (GGT→GGC) | Y75_RS06420 → | nitrate reductase subunit alpha |
| RA | 1,303,712 | A→G | 100% | S273G (AGC→GGC) | oppA → | oligopeptide ABC transporter substrate‑binding protein OppA |
| RA | 1,329,104 | T→C | 5.2% | I180T (ATC→ACC) | rluB → | 23S rRNA pseudouridine(2605) synthase RluB |
| RA | 1,331,342 | T→C | 7.4% | S99S (AGT→AGC) | sohB → | protease SohB |
| RA | 1,333,363 | T→C | 5.5% | V201A (GTT→GCT) | topA → | type I DNA topoisomerase |
| RA | 1,349,144 | A→G | 52.8% | W495R (TGG→CGG) | rnb ← | exoribonuclease II |
| RA | 1,349,152 | T→C | 5.2% | Y492C (TAC→TGC) | rnb ← | exoribonuclease II |
| RA | 1,350,607 | A→G | 20.4% | L7P (CTG→CCG) | rnb ← | exoribonuclease II |
| RA | 1,356,817 | A→G | 100% | V123A (GTG→GCG) | sapB ← | peptide ABC transporter permease SapB |
| RA | 1,365,413 | A→G | 100% | L319L (TTA→TTG) | puuC → | aldehyde dehydrogenase PuuC |
| RA | 1,379,398 | A→C | 10.2% | T285P (ACC→CCC) | Y75_RS06935 → | Gfo/Idh/MocA family oxidoreductase |
| RA | 1,386,502 | T→G | 8.6% | G224G (GGT→GGG) | Y75_RS06965 → | YcjX family protein |
| RA | 1,393,120 | T→C | 51.6% | N150D (AAT→GAT) | Y75_RS07000 ← | alpha/beta hydrolase |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ttcA]–Y75_RS24865 | 33 genes [ttcA], Y75_RS23540, xisR, rcbA, ralR, recT, recE, Y75_RS07140, Y75_RS07145, kilR, Y75_RS07155, Y75_RS07160, racR, ydaS, Y75_RS07175, Y75_RS07180, Y75_RS07185, Y75_RS07190, rzoD, Y75_RS07200, Y75_RS07205, Y75_RS07210, Y75_RS07215, Y75_RS07220, Y75_RS07225, Y75_RS07230, Y75_RS07235, Y75_RS23570, Y75_RS07255, Y75_RS07260, ydfK, Y75_RS24860, Y75_RS24865 |
|
| RA | 1,457,560 | A→C | 10.6% | H228P (CAC→CCC) | paaC → | phenylacetate‑CoA oxygenase subunit PaaC |
| RA | 1,457,976 | C→A | 100% | A113D (GCC→GAC) | paaD → | phenylacetate degradation protein PaaD |
| RA | 1,464,132 | T→C | 100% | G98G (GGT→GGC) | paaF → | phenylacetate‑‑CoA ligase |
| RA | 1,482,657 | C→T | 33.7% | A20V (GCC→GTC) | Y75_RS07450 → | phosphatase PAP2/dual specificity phosphatase family protein |
| RA | 1,531,018 | A→C | 13.9% | H389P (CAC→CCC) | Y75_RS07695 → | RHS repeat protein |
| RA | 1,550,225 | T→C | 100% | Y371H (TAC→CAC) | fdnG → | formate dehydrogenase‑N subunit alpha |
| RA | 1,553,109 | A→G | 8.1% | T20A (ACC→GCC) | fdnI → | formate dehydrogenase‑N subunit gamma |
| RA | 1,555,753 | A→G | 18.6% | L544P (CTG→CCG) | Y75_RS07805 ← | malate dehydrogenase |
| RA | 1,565,102 | T→G | 13.1% | L782L (CTA→CTC) | dosP ← | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| RA | 1,568,023 | G→T | 14.3% | Q278K (CAA→AAA) | dosC ← | diguanylate cyclase DosC |
| RA | 1,590,915 | A→G | 100% | pseudogene (879/1227 nt) | Y75_RS07940 ← | fimbrial biogenesis outer membrane usher protein |
| RA | 1,597,551 | A→G | 13.1% | pseudogene (2250/4025 nt) | Y75_RS07965 ← | autotransporter barrel domain‑containing lipoprotein |
| RA | 1,605,637 | T→G | 16.8% | V302G (GTG→GGG) | lsrC → | autoinducer 2 ABC transporter permease LsrC |
| RA | 1,623,852 | C→G | 30.9% | N269K (AAC→AAG) | ydeE → | efflux MFS transporter YdeE |
| RA | 1,628,459 | A→G | 100% | G212G (GGT→GGC) | dcp ← | peptidyl‑dipeptidase Dcp |
| RA | 1,674,232 | T→C | 5.6% | Y187H (TAC→CAC) | Y75_RS08420 → | serine protease |
| RA | 1,687,275 | T→C | 100% | N343S (AAC→AGC) | fumC ← | class II fumarate hydratase |
| RA | 1,707,042 | A→G | 100% | T27A (ACG→GCG) | Y75_RS08565 → | DUF2569 domain‑containing protein |
| RA | 1,707,215 | T→C | 100% | R84R (CGT→CGC) | Y75_RS08565 → | DUF2569 domain‑containing protein |
| RA | 1,712,704 | A→G | 100% | T55A (ACC→GCC) | Y75_RS08595 → | electron transport complex subunit RsxE |
| RA | 1,715,402 | T→C | 13.6% | V307A (GTT→GCT) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | 1,715,957 | A→G | 100% | D492G (GAC→GGC) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | 1,733,814 | G→A | 100% | G1005D (GGC→GAC) | Y75_RS08705 → | ATP‑dependent helicase |
| RA | 1,739,298 | A→G | 100% | intergenic (‑39/‑260) | ynhF ← / → purR | stress response protein YnhF/HTH‑type transcriptional repressor PurR |
| RA | 1,743,754 | T→C | 25.8% | C210R (TGT→CGT) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,773,659 | T→C | 7.2% | V292A (GTC→GCC) | Y75_RS08900 → | MFS transporter |
| RA | 1,774,129 | T→C | 9.1% | intergenic (+130/‑97) | Y75_RS08900 → / → Y75_RS08905 | MFS transporter/MFS transporter |
| RA | 1,789,889 | A→G | 100% | Y244C (TAC→TGC) | ppsR → | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| RA | 1,795,962 | T→C | 100% | E302G (GAG→GGG) | btuC ← | vitamin B12 ABC transporter permease BtuC |
| RA | 1,813,544 | G→A | 100% | V299V (GTG→GTA) | Y75_RS09105 → | cystine/sulfocysteine:cation symporter |
| RA | 1,826,815 | T→C | 100% | intergenic (‑164/+39) | ves ← / ← spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone |
| RA | 1,840,153 | G→A | 10.8% | A410T (GCG→ACG) | Y75_RS09240 → | ABC transporter permease subunit |
| RA | 1,848,612 | T→C | 23.2% | K21K (AAA→AAG) | Y75_RS09280 ← | DNA topoisomerase III |
| RA | 1,878,196 | A→T | 11.6% | L270F (TTA→TTT) | nimT → | 2‑nitroimidazole transporter |
| RA | 1,880,274 | A→G | 11.0% | G282G (GGA→GGG) | dgcP → | diguanylate cyclase DgcP |
| RA | 1,881,068:1 | +T | 100% | intergenic (‑99/+49) | Y75_RS09455 ← / ← Y75_RS09460 | GlsB/YeaQ/YmgE family stress response membrane protein/DUF1869 domain‑containing protein |
| RA | 1,889,098 | A→G | 8.4% | I199T (ATC→ACC) | rnd ← | ribonuclease D |
| RA | 1,891,010 | G→A | 100% | R151C (CGT→TGT) | fadD ← | long‑chain‑fatty‑acid‑‑CoA ligase FadD |
| RA | 1,892,829 | A→G | 6.2% | T51T (ACT→ACC) | tsaB ← | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB |
| RA | 1,895,620 | A→G | 5.8% | intergenic (+195/‑167) | Y75_RS09525 → / → Y75_RS09530 | RidA family protein/DUF1889 family protein |
| RA | 1,897,648 | A→G | 100% | E377G (GAA→GGA) | pabB → | aminodeoxychorismate synthase component 1 |
| RA | 1,925,886 | T→C | 100% | E140E (GAA→GAG) | copD ← | copper homeostasis membrane protein CopD |
| RA | 1,977,463 | T→C | 100% | E169E (GAA→GAG) | Y75_RS09960 ← | flagellar motor protein MotB |
| RA | 1,977,759 | T→C | 100% | T71A (ACG→GCG) | Y75_RS09960 ← | flagellar motor protein MotB |
| RA | 2,003,875 | G→A | 9.1% | Q18* (CAG→TAG) | Y75_RS10125 ← | RNA polymerase sigma factor FliA |
| RA | 2,005,721 | T→C | 8.2% | N8S (AAC→AGC) | fliC ← | H48 family flagellin FliC |
| RA | 2,005,956 | A→G | 100% | intergenic (‑213/‑53) | fliC ← / → fliD | H48 family flagellin FliC/flagellar filament capping protein FliD |
| RA | 2,008,180 | G→A | 6.4% | G111S (GGC→AGC) | fliT → | flagella biosynthesis regulatory protein FliT |
| RA | 2,047,421 | A→G | 100% | D116G (GAT→GGT) | yeeJ → | inverse autotransporter adhesin YeeJ |
| RA | 2,064,365 | A→G | 5.1% | intergenic (‑295/‑32) | nac ← / → Y75_RS10445 | nitrogen assimilation transcriptional regulator/tRNA‑Asn |
| RA | 2,065,115 | T→C | 100% | T117A (ACT→GCT) | ldtA ← | L,D‑transpeptidase |
| RA | 2,095,845 | A→C | 10.5% | T81P (ACC→CCC) | hisB → | bifunctional histidinol‑phosphatase/imidazoleglycerol‑phosphate dehydratase HisB |
| RA | 2,119,805 | G→A | 100% | P246L (CCG→CTG) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | 2,123,615 | A→G | 100% | I26T (ATC→ACC) | Y75_RS10745 ← | UDP‑glucose‑‑undecaprenyl‑phosphate glucose‑1‑phosphate transferase |
| RA | 2,126,697 | T→C | 8.3% | N396S (AAC→AGC) | wcaI ← | colanic acid biosynthesis fucosyltransferase WcaI |
| RA | 2,127,707 | T→C | 5.6% | K59K (AAA→AAG) | wcaI ← | colanic acid biosynthesis fucosyltransferase WcaI |
| RA | 2,144,211 | T→C | 9.5% | T48A (ACG→GCG) | dcd ← | dCTP deaminase |
| RA | 2,144,946 | T→C | 100% | D47G (GAC→GGC) | udk ← | uridine kinase |
| RA | 2,152,044 | A→C | 17.4% | V360G (GTG→GGG) | yegI ← | protein kinase YegI |
| RA | 2,153,722 | C→T | 23.3% | P134L (CCT→CTT) | Y75_RS10870 → | YegJ family protein |
| RA | 2,153,826 | G→T | 28.7% | intergenic (+43/+22) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| RA | 2,153,828 | C→T | 23.7% | intergenic (+45/+20) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| RA | 2,158,112 | T→C | 5.3% | L238P (CTT→CCT) | mdtB → | multidrug efflux RND transporter permease subunit MdtB |
| RA | 2,173,673 | A→C | 9.8% | pseudogene (198/306 nt) | Y75_RS10955 ← | DeoR/GlpR transcriptional regulator |
| RA | 2,179,979 | G→A | 100% | P187L (CCG→CTG) | gatY ← | tagatose‑bisphosphate aldolase subunit GatY |
| RA | 2,188,533 | T→G | 21.7% | T35P (ACC→CCC) | thiM ← | hydroxyethylthiazole kinase |
| RA | 2,204,029 | T→C | 19.2% | P139P (CCT→CCC) | Y75_RS11105 → | DUF4132 domain‑containing protein |
| RA | 2,234,532 | A→G | 100% | E60E (GAA→GAG) | Y75_RS11235 → | CidB/LrgB family autolysis modulator |
| RA | 2,235,859 | G→A | 6.1% | A228T (GCT→ACT) | cdd → | cytidine deaminase |
| RA | 2,236,204 | T→C | 100% | intergenic (+142/‑8) | cdd → / → sanA | cytidine deaminase/outer membrane permeability protein SanA |
| RA | 2,249,292 | C→T | 13.8% | R271H (CGC→CAC) | cirA ← | catecholate siderophore receptor CirA |
| RA | 2,269,816 | A→G | 5.1% | T80A (ACC→GCC) | Y75_RS11400 → | mannitol dehydrogenase family protein |
| RA | 2,271,636 | G→A | 82.3% | T158T (ACG→ACA) | Y75_RS11405 → | zinc‑binding GTPase YeiR |
| RA | 2,274,900 | T→C | 5.3% | Y281H (TAT→CAT) | Y75_RS11420 → | cyclic di‑GMP phosphodiesterase |
| RA | 2,274,950 | A→G | 27.6% | V297V (GTA→GTG) | Y75_RS11420 → | cyclic di‑GMP phosphodiesterase |
| RA | 2,293,723 | T→C | 10.0% | intergenic (‑308/‑111) | Y75_RS11495 ← / → narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| RA | 2,294,824 | C→T | 11.8% | Q307Q (CAG→CAA) | Y75_RS11510 ← | cytochrome c‑type biogenesis thiol:disulfide oxidoreductase CcmH |
| RA | 2,307,983 | C→T | 7.2% | intergenic (+256/+459) | eco → / ← mqo | serine protease inhibitor ecotin/malate dehydrogenase (quinone) |
| RA | 2,308,240 | T→C | 8.1% | intergenic (+513/+202) | eco → / ← mqo | serine protease inhibitor ecotin/malate dehydrogenase (quinone) |
| RA | 2,320,623 | A→G | 100% | pseudogene (170/432 nt) | Y75_RS11645 ← | response regulator |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | Y75_RS11650–[rcsC] | Y75_RS11650, Y75_RS11650, [rcsC] | |
| RA | 2,324,420 | G→A | 7.4% | pseudogene (127/2421 nt) | rcsC ← | two‑component system sensor histidine kinase RcsC |
| RA | 2,341,264 | A→C | 16.8% | G17G (GGT→GGG) | Y75_RS11720 ← | DUF2138 domain‑containing protein |
| RA | 2,347,609 | C→T | 100% | G411S (GGC→AGC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | 2,353,303 | T→G | 11.5% | G40G (GGT→GGG) | yfaE → | ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE |
| RA | 2,365,255 | T→C | 8.5% | H277R (CAC→CGC) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,372,052 | G→A | 13.2% | Q104Q (CAG→CAA) | arnC → | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| RA | 2,374,075 | T→C | 17.8% | V456A (GTG→GCG) | arnA → | bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA |
| RA | 2,380,056 | A→G | 5.8% | C193R (TGC→CGC) | menC ← | o‑succinylbenzoate synthase |
| RA | 2,381,027 | T→C | 12.3% | T155A (ACT→GCT) | menB ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA synthase |
| RA | 2,383,639 | T→C | 18.0% | G97G (GGA→GGG) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
| RA | 2,383,659 | T→C | 11.6% | I91V (ATT→GTT) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
| RA | 2,418,020 | T→C | 15.9% | Q7Q (CAA→CAG) | Y75_RS12060 ← | YfbU family protein |
| RA | 2,429,952 | A→G | 22.3% | S2P (TCC→CCC) | hisP ← | histidine ABC transporter ATP‑binding protein HisP |
| RA | 2,458,635 | T→C | 13.0% | pseudogene (1813/2646 nt) | yfcU ← | fimbrial usher protein YfcU |
| RA | 2,464,818 | T→C | 6.5% | A366A (GCA→GCG) | fadI ← | acetyl‑CoA C‑acyltransferase FadI |
| RA | 2,469,945 | T→A | 11.2% | Y170F (TAC→TTC) | mlaA ← | phospholipid‑binding lipoprotein MlaA |
| RA | 2,477,843 | A→G | 26.8% | V162A (GTG→GCG) | Y75_RS12375 ← | PerC family transcriptional regulator |
| RA | 2,484,772 | T→C | 100% | V42A (GTT→GCT) | dsdA → | D‑serine ammonia‑lyase |
| RA | 2,511,805 | T→C | 8.2% | T92A (ACG→GCG) | ypdF ← | aminopeptidase |
| RA | 2,513,660 | G→A | 100% | A10V (GCC→GTC) | Y75_RS12535 ← | fructose‑like phosphotransferase enzyme IIB component 1 |
| RA | 2,530,688 | C→A | 7.2% | T39N (ACC→AAC) | Y75_RS12650 → | outer membrane protein |
| RA | 2,535,727 | T→C | 100% | D318G (GAC→GGC) | zipA ← | cell division protein ZipA |
| RA | 2,536,366 | A→G | 8.1% | V105A (GTC→GCC) | zipA ← | cell division protein ZipA |
| RA | 2,538,886 | T→C | 50.6% | intergenic (+60/‑324) | cysK → / → ptsH | cysteine synthase A/phosphocarrier protein Hpr |
| RA | 2,545,887 | T→C | 100% | Q125R (CAG→CGG) | cysA ← | sulfate/thiosulfate ABC transporter ATP‑binding protein CysA |
| RA | 2,565,892 | A→G | 100% | V291A (GTG→GCG) | eutH ← | ethanolamine utilization protein EutH |
| RA | 2,579,295 | A→G | 8.2% | D335G (GAC→GGC) | tkt → | transketolase |
| RA | 2,605,808 | T→C | 24.3% | F79S (TTC→TCC) | hyfF → | hydrogenase 4 subunit F |
| RA | 2,606,882 | T→G | 21.0% | V437G (GTA→GGA) | hyfF → | hydrogenase 4 subunit F |
| RA | 2,612,091 | A→G | 8.1% | P512P (CCA→CCG) | Y75_RS13040 → | DNA‑binding transcriptional regulator HyfR |
| RA | 2,616,247 | T→A | 8.7% | V5E (GTA→GAA) | arsC → | arsenate reductase (glutaredoxin) |
| RA | 2,621,296 | T→C | 100% | V136A (GTG→GCG) | purN → | phosphoribosylglycinamide formyltransferase |
| RA | 2,621,951 | G→A | 100% | V84V (GTG→GTA) | ppk1 → | polyphosphate kinase 1 |
| RA | 2,627,276 | T→A | 20.8% | T107S (ACT→TCT) | pdeF ← | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| RA | 2,627,287 | T→A | 9.5% | Y103F (TAC→TTC) | pdeF ← | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| RA | 2,634,872 | T→C | 22.8% | T381A (ACC→GCC) | der ← | ribosome biogenesis GTPase Der |
| RA | 2,646,727 | T→C | 77.6% | Q1406R (CAG→CGG) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,650,563 | G→A | 6.1% | R127R (CGC→CGT) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,666,599 | A→G | 100% | intergenic (‑97/+63) | Y75_RS13270 ← / ← Y75_RS13275 | 3‑phenylpropionate MFS transporter/DNA‑binding transcriptional regulator HcaR |
| RA | 2,668,960 | T→C | 100% | Y425H (TAC→CAC) | Y75_RS13280 → | aromatic ring‑hydroxylating dioxygenase subunit alpha |
| RA | 2,675,299 | G→A | 100% | A61A (GCC→GCT) | Y75_RS13320 ← | ABC transporter permease |
| RA | 2,676,395 | C→T | 10.2% | R208Q (CGG→CAG) | Y75_RS13325 ← | sugar ABC transporter ATP‑binding protein |
| RA | 2,685,344 | G→A | 9.5% | G285D (GGC→GAC) | hmpA → | NO‑inducible flavohemoprotein |
| RA | 2,693,128 | G→A | 20.5% | R358C (CGC→TGC) | purL ← | phosphoribosylformylglycinamidine synthase |
| RA | 2,704,068 | A→C | 10.0% | G571G (GGT→GGG) | lepA ← | elongation factor 4 |
| RA | 2,704,827 | G→A | 7.1% | S318S (AGC→AGT) | lepA ← | elongation factor 4 |
| RA | 2,723,361 | G→A | 81.2% | L348L (CTG→TTG) | kgtP ← | alpha‑ketoglutarate permease |
| RA | 2,743,082 | A→G | 48.5% | G35G (GGT→GGC) | rplS ← | 50S ribosomal protein L19 |
| RA | 2,747,579 | A→G | 100% | K50K (AAA→AAG) | Y75_RS13680 → | HlyC/CorC family transporter |
| RA | 2,751,156 | G→A | 8.0% | D236N (GAC→AAC) | recN → | DNA repair protein RecN |
| RA | 2,764,229 | T→C | 6.9% | E68E (GAA→GAG) | Y75_RS13765 ← | DUF1524 domain‑containing protein |
| RA | 2,768,585 | T→C | 100% | V76A (GTG→GCG) | Y75_RS13790 → | WYL domain‑containing protein |
| RA | 2,775,211 | A→G | 10.1% | E57G (GAG→GGG) | Y75_RS13830 → | RadC family protein |
| RA | 2,779,100 | A→G | 100% | D761D (GAT→GAC) | ypjA ← | adhesin‑like autotransporter YpjA/EhaD |
| RA | 2,790,905 | T→C | 100% | V326A (GTC→GCC) | gabD → | NADP‑dependent succinate‑semialdehyde dehydrogenase |
| RA | 2,795,799 | T→C | 100% | intergenic (‑115/‑68) | Y75_RS13915 ← / → Y75_RS13920 | YqaE/Pmp3 family membrane protein/helix‑turn‑helix transcriptional regulator |
| RA | 2,818,531 | G→A | 28.5% | R713C (CGC→TGC) | alaS ← | alanine‑‑tRNA ligase |
| RA | 2,819,373 | T→C | 6.9% | Q432R (CAG→CGG) | alaS ← | alanine‑‑tRNA ligase |
| RA | 2,834,637 | G→A | 100% | A482V (GCG→GTG) | hypF ← | carbamoyltransferase HypF |
| RA | 2,851,804 | T→C | 27.6% | L338P (CTG→CCG) | hypD → | hydrogenase formation protein HypD |
| RA | 2,856,122 | T→A | 100% | L125* (TTG→TAG) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,858,090 | T→G | 15.2% | V781G (GTG→GGG) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,858,102 | T→G | 28.6% | V785G (GTT→GGT) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,866,109 | C→A | 100% | pseudogene (99/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,875,230 | A→G | 23.2% | intergenic (‑245/‑7) | cysD ← / → iap | sulfate adenylyltransferase subunit CysD/alkaline phosphatase isozyme conversion aminopeptidase |
| RA | 2,875,251 | G→T | 10.9% | L5F (TTG→TTT) | iap → | alkaline phosphatase isozyme conversion aminopeptidase |
| RA | 2,890,186 | T→C | 46.8% | E123E (GAA→GAG) | cysJ ← | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| RA | 2,890,541 | A→G | 100% | V5A (GTC→GCC) | cysJ ← | NADPH‑dependent assimilatory sulfite reductase flavoprotein subunit |
| RA | 2,890,872 | G→T | 12.1% | M1M (ATG→ATT) † | queD → | 6‑carboxytetrahydropterin synthase QueD |
| RA | 2,906,975 | C→G | 100% | D450H (GAC→CAC) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| JC | 2,910,136 | Δ12 bp | 100% | coding (2161‑2172/2235 nt) | Y75_RS14515 ← | GTP pyrophosphokinase |
| RA | 2,939,008 | A→C | 11.6% | C298G (TGC→GGC) | rlmM ← | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM |
| RA | 2,941,170 | T→C | 100% | A18A (GCA→GCG) | Y75_RS14640 ← | glycine cleavage system transcriptional regulator GcvA |
| RA | 2,973,749 | T→G | 9.8% | T308P (ACT→CCT) | aas ← | bifunctional acyl‑ACP‑‑phospholipid O‑acyltransferase/long‑chain‑fatty‑acid‑‑ACP ligase |
| RA | 2,976,822 | T→A | 16.2% | Y245F (TAT→TTT) | lysA ← | diaminopimelate decarboxylase |
| RA | 2,981,321 | T→C | 100% | Q198Q (CAA→CAG) | kduD ← | 2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
| RA | 2,999,613 | A→G | 100% | T218A (ACC→GCC) | xdhA → | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 2,999,815 | T→C | 13.5% | L285P (CTC→CCC) | xdhA → | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,033,104 | A→G | 46.6% | Y243H (TAC→CAC) | lysS ← | lysine‑‑tRNA ligase |
| RA | 3,038,640 | G→A | 7.2% | E44K (GAG→AAG) | fldB → | flavodoxin FldB |
| RA | 3,043,955 | T→C | 7.0% | G201G (GGA→GGG) | Y75_RS15125 ← | SDR family oxidoreductase |
| RA | 3,045,505 | T→C | 26.9% | A731A (GCA→GCG) | gcvP ← | aminomethyl‑transferring glycine dehydrogenase |
| RA | 3,061,374 | A→C | 6.8% | T623T (ACA→ACC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,071,463 | G→A | 100% | A295A (GCC→GCT) | epd ← | erythrose‑4‑phosphate dehydrogenase |
| RA | 3,085,013 | G→A | 100% | R57R (CGG→CGA) | Y75_RS15310 → | hypothetical protein |
| RA | 3,104,180 | G→A | 7.4% | intergenic (+12/‑190) | mltC → / → Y75_RS15435 | membrane‑bound lytic murein transglycosylase MltC/nucleoside permease NupG |
| RA | 3,108,691 | T→C | 8.1% | S161S (AGT→AGC) | Y75_RS15445 → | DUF554 domain‑containing protein |
| RA | 3,146,883 | G→A | 15.0% | G111S (GGT→AGT) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,152,550 | A→C | 16.1% | H111P (CAC→CCC) | Y75_RS15660 → | DedA family protein |
| RA | 3,155,352 | C→A | 8.6% | A25E (GCA→GAA) | dkgA → | 2,5‑didehydrogluconate reductase DkgA |
| RA | 3,168,585 | T→C | 100% | R34R (CGT→CGC) | qseB → | two‑component system response regulator QseB |
| RA | 3,178,798 | T→C | 37.1% | R133R (CGT→CGC) | Y75_RS15800 → | DUF1190 family protein |
| RA | 3,194,166 | T→C | 100% | D415G (GAC→GGC) | hldE ← | bifunctional D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase/D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase HldE |
| RA | 3,196,264 | G→A | 7.9% | R678R (CGC→CGT) | glnE ← | bifunctional [glutamate‑‑ammonia ligase]‑adenylyl‑L‑tyrosine phosphorylase/[glutamate‑‑ammonia‑ligase] adenylyltransferase |
| RA | 3,202,142 | A→G | 9.4% | W216R (TGG→CGG) | bacA ← | undecaprenyl‑diphosphate phosphatase |
| RA | 3,203,757 | G→T | 11.6% | L136F (TTG→TTT) | plsY → | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsY |
| RA | 3,205,094 | G→A | 23.9% | intergenic (‑182/‑25) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,108 | C→A | 21.3% | intergenic (‑196/‑11) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,127 | C→G | 11.9% | S3R (AGC→AGG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,139 | G→A | 22.2% | K7K (AAG→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,140 | C→A | 16.6% | Q8K (CAA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,162 | C→A | 9.4% | T15K (ACA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,222,220 | T→C | 100% | V311A (GTG→GCG) | ebgA → | beta‑galactosidase subunit alpha |
| RA | 3,226,690 | T→C | 100% | G78G (GGT→GGC) | ygjJ → | protein YgjJ |
| RA | 3,230,205 | T→C | 100% | intergenic (+310/‑116) | ygjK → / → Y75_RS16040 | alpha‑glucosidase/NADPH‑dependent 2,4‑dienoyl‑CoA reductase |
| RA | 3,231,977 | C→T | 5.2% | R553C (CGT→TGT) | Y75_RS16040 → | NADPH‑dependent 2,4‑dienoyl‑CoA reductase |
| RA | 3,247,046 | T→C | 100% | G206G (GGT→GGC) | Y75_RS16115 → | DedA family protein |
| RA | 3,252,124 | G→A | 100% | V249V (GTC→GTT) | Y75_RS16165 ← | DNA‑binding transcriptional regulator YhaJ |
| RA | 3,258,241 | G→T | 6.2% | P22Q (CCA→CAA) | Y75_RS16190 ← | L‑serine ammonia‑lyase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | Y75_RS16205–[tdcD] | Y75_RS16205, [tdcD] | |
| RA | 3,277,364 | A→G | 6.8% | E58G (GAG→GGG) | Y75_RS16280 → | type II toxin‑antitoxin system ribonuclease toxin YhaV |
| RA | 3,278,946 | A→C | 13.9% | T60P (ACC→CCC) | kbaZ → | tagatose‑bisphosphate aldolase subunit KbaZ |
| RA | 3,280,261 | C→A | 8.2% | Q64K (CAA→AAA) | Y75_RS16295 → | PTS N‑acetylgalactosamine transporter subunit IIB |
| RA | 3,284,089 | T→C | 100% | V22A (GTG→GCG) | Y75_RS16320 → | PTS N‑acetylgalactosamine transporter subunit IIB |
| RA | 3,285,754 | A→T | 12.2% | Y141F (TAC→TTC) | Y75_RS16330 → | PTS N‑acetylgalactosamine transporter subunit IID |
| RA | 3,292,756 | T→C | 8.9% | L145L (TTA→TTG) | rsmI ← | 16S rRNA (cytidine(1402)‑2'‑O)‑methyltransferase |
| RA | 3,309,942 | T→G | 100% | D361A (GAC→GCC) | pnp ← | polyribonucleotide nucleotidyltransferase |
| RA | 3,316,515 | T→G | 100% | A289A (GCA→GCC) | nusA ← | transcription termination/antitermination protein NusA |
| RA | 3,317,320 | T→C | 100% | E21G (GAG→GGG) | nusA ← | transcription termination/antitermination protein NusA |
| RA | 3,324,200 | A→C | 8.8% | G189G (GGT→GGG) | folP ← | dihydropteroate synthase |
| RA | 3,325,735 | A→G | 8.1% | G352G (GGT→GGC) | ftsH ← | ATP‑dependent zinc metalloprotease FtsH |
| RA | 3,335,060 | C→T | 53.0% | intergenic (+18/+30) | sfsB → / ← murA | DNA‑binding transcriptional regulator SfsB/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,337,200 | T→C | 100% | T183A (ACG→GCG) | mlaC ← | phospholipid‑binding protein MlaC |
| RA | 3,340,133 | C→T | 9.0% | L2F (CTT→TTT) | Y75_RS16615 → | calcium/sodium antiporter |
| RA | 3,370,730 | A→C | 17.7% | G54G (GGT→GGG) | Y75_RS16755 ← | N‑acetylmannosamine‑6‑phosphate 2‑epimerase |
| RA | 3,390,080 | A→G | 15.7% | I236V (ATC→GTC) | aaeR → | HTH‑type transcriptional activator AaeR |
| RA | 3,397,873 | C→T | 100% | V121I (GTC→ATC) | yhdE ← | nucleoside triphosphate pyrophosphatase YhdE |
| RA | 3,442,749 | A→G | 100% | Q91Q (CAA→CAG) | thiE → | thiamine phosphate synthase |
| RA | 3,455,034 | T→C | 100% | T135A (ACC→GCC) | rpoB ← | DNA‑directed RNA polymerase subunit beta |
| RA | 3,474,155 | C→A | 5.9% | Q249K (CAA→AAA) | trmA → | tRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| RA | 3,475,831 | A→G | 100% | intergenic (‑271/‑60) | fabR ← / → sthA | HTH‑type transcriptional repressor FabR/Si‑specific NAD(P)(+) transhydrogenase |
| RA | 3,485,349 | C→G | 15.5% | G589G (GGC→GGG) | ppc → | phosphoenolpyruvate carboxylase |
| RA | 3,486,908 | C→T | 6.3% | L165L (CTG→TTG) | cptA → | phosphoethanolamine transferase CptA |
| RA | 3,498,598 | T→C | 100% | V318A (GTC→GCC) | gldA → | bifunctional L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 3,519,498 | A→G | 18.0% | T14A (ACC→GCC) | glpK → | glycerol kinase GlpK |
| RA | 3,521,495 | A→C | 10.3% | T132P (ACC→CCC) | glpX → | class II fructose‑bisphosphatase |
| RA | 3,541,864 | A→G | 9.4% | E389G (GAA→GGA) | rhaA → | L‑rhamnose isomerase |
| RA | 3,571,110 | A→T | 13.6% | T66S (ACC→TCC) | Y75_RS17735 → | MFS transporter |
| RA | 3,604,149 | A→G | 51.9% | V14A (GTT→GCT) | Y75_RS17890 ← | IMPACT family protein |
| RA | 3,609,529 | A→T | 8.0% | I209N (ATT→AAT) | fre ← | NAD(P)H‑flavin reductase |
| RA | 3,609,535 | G→C | 11.6% | A207G (GCG→GGG) | fre ← | NAD(P)H‑flavin reductase |
| RA | 3,620,605 | Δ1 bp | 100% | coding (94/816 nt) | Y75_RS17970 → | dienelactone hydrolase family protein |
| RA | 3,632,590 | A→T | 10.9% | I30F (ATT→TTT) | rarD → | EamA family transporter RarD |
| RA | 3,645,110 | A→T | 100% | L140Q (CTG→CAG) | cyaA ← | class I adenylate cyclase |
| RA | 3,651,720 | G→A | 10.1% | T349T (ACG→ACA) | Y75_RS18115 → | arylsulfatase AslA |
| RA | 3,656,455 | C→T | 100% | V91I (GTT→ATT) | rffM ← | lipopolysaccharide N‑acetylmannosaminouronosyltransferase |
| RA | 3,678,574 | G→A | 15.0% | G46G (GGC→GGT) | ilvC ← | ketol‑acid reductoisomerase |
| RA | 3,682,574 | C→T | 78.6% | A210A (GCG→GCA) | ilvD ← | dihydroxy‑acid dehydratase |
| RA | 3,692,566 | T→C | 100% | noncoding (421/2925 nt) | Y75_RS18325 ← | 23S ribosomal RNA |
| RA | 3,709,331 | G→A | 27.4% | Q66* (CAG→TAG) | asnA ← | aspartate‑‑ammonia ligase |
| RA | 3,710,290 | T→C | 100% | L22P (CTG→CCG) | mioC → | FMN‑binding protein MioC |
| RA | 3,711,764 | G→A | 13.2% | Q239Q (CAG→CAA) | mnmG → | tRNA uridine(34) 5‑carboxymethylaminomethyl synthesis enzyme MnmG |
| RA | 3,712,414 | G→C | 100% | G456A (GGC→GCC) | mnmG → | tRNA uridine(34) 5‑carboxymethylaminomethyl synthesis enzyme MnmG |
| RA | 3,715,056 | C→T | 100% | P143S (CCG→TCG) | atpB → | F0F1 ATP synthase subunit A |
| RA | 3,741,162 | A→T | 9.2% | Y364F (TAC→TTC) | Y75_RS18545 → | adenine permease AdeP |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | Y75_RS18560–Y75_RS18560 | Y75_RS18560, Y75_RS18560 | |
| RA | 3,746,364 | T→G | 7.6% | L13F (TTA→TTC) | mdtL ← | multidrug efflux MFS transporter MdtL |
| RA | 3,746,729 | A→G | 5.3% | pseudogene (180/375 nt) | Y75_RS18580 ← | tryptophan permease |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | Y75_RS18585–[tnaB] | Y75_RS18585, [tnaB] | |
| MC JC | 3,750,591 | Δ1,199 bp | 100% | Y75_RS18600 | Y75_RS18600 | |
| RA | 3,757,172 | G→A | 9.7% | G163S (GGT→AGT) | dnaA → | chromosomal replication initiator protein DnaA |
| RA | 3,764,879 | G→T | 8.7% | T33T (ACC→ACA) | Y75_RS18670 ← | hypothetical protein |
| RA | 3,766,807 | A→G | 9.1% | A289A (GCA→GCG) Q2R (CAG→CGG) |
Y75_RS18680 → Y75_RS18685 → |
2‑dehydro‑3‑deoxygalactonokinase 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | 3,777,745 | A→T | 24.0% | I312F (ATT→TTT) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,754 | A→C | 27.0% | T315P (ACC→CCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,778,980 | C→T | 26.9% | pseudogene (553/815 nt) | Y75_RS18745 → | inactive 6‑phospho‑alpha‑glucosidase |
| RA | 3,784,364 | A→G | 100% | D86G (GAC→GGC) | Y75_RS18770 → | YidH family protein |
| RA | 3,810,059 | A→T | 9.9% | intergenic (‑101/+20) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,819,328 | C→A | 7.8% | A28A (GCC→GCA) | ligB → | NAD‑dependent DNA ligase LigB |
| RA | 3,824,607 | Δ1 bp | 100% | intergenic (+55/‑40) | rph → / → pyrE | ribonuclease PH/orotate phosphoribosyltransferase |
| RA | 3,855,515 | T→G | 9.1% | V39G (GTG→GGG) | Y75_RS19125 → | rhodanese‑like domain‑containing protein |
| RA | 3,857,496 | A→G | 26.1% | D248G (GAT→GGT) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,502 | T→G | 16.9% | V250G (GTG→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,858,404 | T→G | 16.1% | G184G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,449 | T→G | 17.0% | G199G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,503 | C→G | 11.6% | G217G (GGC→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,538 | C→G | 16.4% | P229R (CCG→CGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,885,052 | T→G | 11.8% | G383G (GGT→GGG) | Y75_RS19250 → | aldehyde dehydrogenase AldB |
| RA | 3,892,539 | T→C | 6.1% | T265A (ACC→GCC) | lyxK ← | L‑xylulokinase |
| RA | 3,908,726 | G→T | 9.2% | Q187K (CAA→AAA) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,914,027 | C→A | 7.5% | E168* (GAA→TAA) | Y75_RS19395 ← | O‑acetyltransferase WecH |
| RA | 3,942,761 | T→C | 100% | V399V (GTA→GTG) | bcsE ← | cellulose biosynthesis protein BcsE |
| RA | 3,950,257 | A→G | 100% | Y35C (TAC→TGC) | bcsZ → | cellulase |
| RA | 3,969,883 | T→C | 100% | Y314C (TAC→TGC) | treF ← | alpha,alpha‑trehalase TreF |
| RA | 3,984,411 | A→G | 100% | T97A (ACC→GCC) | hdeB → | acid‑activated periplasmic chaperone HdeB |
| RA | 3,994,332 | A→C | 7.1% | R233R (CGT→CGG) | Y75_RS19765 ← | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase |
| RA | 3,999,427 | T→A | 17.0% | K43* (AAA→TAA) | dtpB ← | dipeptide/tripeptide permease DtpB |
| RA | 4,016,621 | A→G | 11.4% | intergenic (‑78/+12) | Y75_RS19850 ← / ← yhhH | hypothetical protein/protein YhhH |
| RA | 4,021,098 | T→C | 14.8% | G42G (GGA→GGG) | Y75_RS19860 ← | rhs element protein RhsB |
| RA | 4,023,842 | C→T | 13.3% | G131D (GGC→GAC) | nikC ← | nickel ABC transporter permease subunit NikC |
| RA | 4,024,550 | T→G | 14.9% | T209P (ACC→CCC) | nikB ← | nickel ABC transporter permease subunit NikB |
| RA | 4,045,020 | A→G | 16.7% | E29G (GAG→GGG) | Y75_RS19995 → | branched chain amino acid ABC transporter permease LivM |
| RA | 4,064,228 | T→C | 100% | V292A (GTG→GCG) | gntU → | gluconate transporter |
| RA | 4,085,943 | A→G | 7.9% | G463G (GGT→GGC) | malT ← | HTH‑type transcriptional regulator MalT |
| RA | 4,086,357 | A→G | 5.9% | G325G (GGT→GGC) | malT ← | HTH‑type transcriptional regulator MalT |
| RA | 4,099,913 | A→G | 100% | W33R (TGG→CGG) | feoB ← | Fe(2+) transporter permease subunit FeoB |
| RA | 4,119,620 | C→A | 8.7% | T75K (ACA→AAA) | hofP → | DNA utilization protein HofP |
| RA | 4,123,731 | C→T | 6.0% | P208S (CCA→TCA) | damX → | cell division protein DamX |
| RA | 4,129,705 | C→G | 13.8% | A89G (GCG→GGG) | Y75_RS20365 → | YhfX family PLP‑dependent enzyme |
| RA | 4,134,515 | A→T | 9.0% | L40F (TTA→TTT) | Y75_RS20390 → | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
| RA | 4,140,765 | C→A | 15.1% | intergenic (‑208/+36) | frlA ← / ← Y75_RS20420 | fructoselysine/psicoselysine transporter/YhfL family protein |
| RA | 4,140,794 | C→A | 10.3% | intergenic (‑237/+7) | frlA ← / ← Y75_RS20420 | fructoselysine/psicoselysine transporter/YhfL family protein |
| RA | 4,140,812 | T→G | 7.6% | T53P (ACT→CCT) | Y75_RS20420 ← | YhfL family protein |
| RA | 4,166,134 | C→T | 100% | P91S (CCG→TCG) | rpsL → | 30S ribosomal protein S12 |
| RA | 4,179,639 | T→G | 16.8% | T321P (ACC→CCC) | gspF ← | type II secretion system inner membrane protein GspF |
| RA | 4,179,667 | A→T | 10.3% | G311G (GGT→GGA) | gspF ← | type II secretion system inner membrane protein GspF |
| RA | 4,198,857 | C→T | 5.4% | G39G (GGC→GGT) | rpsD → | 30S ribosomal protein S4 |
| RA | 4,231,754 | A→G | 13.3% | E145G (GAG→GGG) | Y75_RS20955 → | Na/Pi cotransporter family protein |
| RA | 4,245,517 | T→A | 7.3% | T110S (ACC→TCC) | Y75_RS21020 ← | D‑xylose transporter XylE |
| RA | 4,249,861 | C→T | 100% | G50D (GGT→GAT) | malE ← | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| RA | 4,262,675 | T→C | 100% | R448R (CGT→CGC) | dinF → | MATE family efflux transporter DinF |
| RA | 4,264,473 | T→C | 100% | V95V (GTT→GTC) | Y75_RS21115 → | DUF2713 domain‑containing protein |
| RA | 4,273,205 | T→G | 19.2% | F68V (TTT→GTT) | Y75_RS21155 → | acid phosphatase AphA |
| RA | 4,278,433 | T→G | 12.1% | T67P (ACC→CCC) | Y75_RS21180 ← | membrane protein |
| RA | 4,306,137 | T→G | 13.9% | T141P (ACC→CCC) | mdtO ← | multidrug efflux transporter permease subunit MdtO |
| RA | 4,311,992 | G→C | 5.2% | pseudogene (486/921 nt) | alsK ← | allose kinase |
| RA | 4,318,372 | A→G | 100% | E115E (GAA→GAG) | rpiB → | bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB |
| RA | 4,322,712 | A→G | 8.9% | L244P (CTG→CCG) | phnK ← | phosphonate C‑P lyase system protein PhnK |
| RA | 4,330,626 | A→G | 6.0% | intergenic (‑207/+451) | yjdN ← / ← Y75_RS21430 | VOC family metalloprotein YjdN/phnA family protein |
| RA | 4,331,214 | T→C | 100% | K67E (AAA→GAA) | Y75_RS21430 ← | phnA family protein |
| RA | 4,341,538 | T→C | 11.0% | M58V (ATG→GTG) | adiC ← | arginine/agmatine antiporter |
| RA | 4,341,565 | T→C | 12.6% | T49A (ACG→GCG) | adiC ← | arginine/agmatine antiporter |
| RA | 4,341,575 | T→C | 17.9% | G45G (GGA→GGG) | adiC ← | arginine/agmatine antiporter |
| RA | 4,341,589 | T→C | 17.0% | I41V (ATT→GTT) | adiC ← | arginine/agmatine antiporter |
| RA | 4,347,208 | A→C | 9.9% | Y207S (TAC→TCC) | melA → | alpha‑galactosidase |
| RA | 4,348,548 | A→T | 8.9% | N164Y (AAT→TAT) | melB → | melibiose:sodium transporter MelB |
| RA | 4,371,271 | Δ2 bp | 100% | pseudogene (182‑183/1304 nt) | Y75_RS21600 ← | anaerobic C4‑dicarboxylate transporter |
| RA | 4,408,585 | T→G | 11.2% | G202G (GGT→GGG) | hflC → | protease modulator HflC |
| RA | 4,419,600 | T→G | 9.7% | F216V (TTT→GTT) | Y75_RS21855 → | isovaleryl‑CoA dehydrogenase |
| RA | 4,434,652 | A→C | 15.7% | I37L (ATT→CTT) | cycA → | D‑serine/D‑alanine/glycine transporter |
| RA | 4,436,515 | A→C | 11.9% | V50G (GTC→GGC) | ytfE ← | iron‑sulfur cluster repair protein YtfE |
| RA | 4,442,880 | T→C | 31.7% | V165A (GTG→GCG) | Y75_RS22000 → | hypothetical protein |
| RA | 4,443,654 | T→C | 100% | T97A (ACC→GCC) | Y75_RS22005 ← | YtfJ family protein |
| RA | 4,455,503 | A→G | 100% | T288A (ACC→GCC) | ytfQ → | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| RA | 4,463,104 | A→C | 14.8% | T156P (ACC→CCC) | pmbA → | metalloprotease PmbA |
| RA | 4,463,791 | A→G | 24.1% | T385A (ACC→GCC) | pmbA → | metalloprotease PmbA |
| RA | 4,469,539 | A→C | 7.5% | V441G (GTG→GGG) | treB ← | PTS trehalose transporter subunit IIBC |
| RA | 4,547,544 | T→C | 100% | intergenic (+231/‑251) | fimE → / → fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA |
| RA | 4,562,036 | C→G | 10.0% | R122G (CGC→GGC) | iraD → | anti‑adapter protein IraD |
| RA | 4,562,052 | A→G | 10.1% | E127G (GAG→GGG) | iraD → | anti‑adapter protein IraD |
| RA | 4,573,193 | G→A | 7.4% | R3C (CGT→TGT) | mdtM ← | multidrug efflux MFS transporter MdtM |
| RA | 4,573,240 | C→A | 8.7% | intergenic (‑41/‑438) | mdtM ← / → Y75_RS25100 | multidrug efflux MFS transporter MdtM/Rpn family recombination‑promoting nuclease/putative transposase |
| RA | 4,573,245 | T→A | 7.6% | intergenic (‑46/‑433) | mdtM ← / → Y75_RS25100 | multidrug efflux MFS transporter MdtM/Rpn family recombination‑promoting nuclease/putative transposase |
| RA | 4,574,132 | A→G | 100% | pseudogene (455/921 nt) | Y75_RS25100 → | Rpn family recombination‑promoting nuclease/putative transposase |
| RA | 4,583,124 | T→C | 9.8% | E298E (GAA→GAG) | Y75_RS22715 ← | 5‑methylcytosine‑specific restriction endonuclease subunit McrB |
| RA | 4,584,336 | A→C | 13.6% | V62G (GTG→GGG) | symE ← | endoribonuclease SymE |
| RA | 4,592,222 | A→G | 7.3% | G198G (GGA→GGG) | Y75_RS22740 → | adenine/cytosine‑specific restriction endonuclease Mrr |
| RA | 4,594,941 | A→G | 6.4% | V340A (GTA→GCA) | btsT ← | pyruvate/proton symporter BtsT |
| MC JC | 4,631,897 | Δ461 bp | 100% | [radA]–[nadR] | [radA], [nadR] | |
| RA | 4,635,020 | A→C | 11.0% | G61G (GGT→GGG) | ettA ← | energy‑dependent translational throttle protein EttA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1301041–1302370 | 1302407 | 38–1367 | 172 [0] | [0] 173 | Y75_RS06530–Y75_RS06530 | Y75_RS06530,Y75_RS06530 |
| * | * | ÷ | NC_007779 | 1397912–1398957 | 1406267 | 7311–8356 | 65 [63] | [0] 140 | [Y75_RS07025]–[Y75_RS07065] | [Y75_RS07025],Y75_RS07030,uspE,Y75_RS07040,ogt,abgT,Y75_RS07060,[Y75_RS07065] |
| * | * | ÷ | NC_007779 | 3986216 | 3988225–3987179 | 964–2010 | 273 [0] | [61] 67 | [slp]–[Y75_RS19725] | [slp],Y75_RS19720,[Y75_RS19725] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 273180 = | NA (NA) | 161 (0.960) | 98/432 | NT | 100% | intergenic (+3/+145) | Y75_RS01330/Y75_RS01335 | hypothetical protein/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 701988 = | 0 (0.000) | coding (29/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | = 381377 | NA (NA) | 6 (0.040) | 4/422 | NT | NA | coding (488/914 nt) | Y75_RS01860 | IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 381470 | NA (NA) | coding (581/914 nt) | Y75_RS01860 | IS3‑like element IS2 family transposase | |||||
| * | ? | NC_007779 | = 575008 | NA (NA) | 12 (0.070) | 10/434 | NT | 5.7% | coding (1041/1068 nt) | Y75_RS02850 | porin |
| ? | NC_007779 | 579322 = | 197 (1.170) | intergenic (+13/+152) | Y75_RS02880/Y75_RS02885 | hypothetical protein/YlcI/YnfO family protein | |||||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 178 (1.090) | 95/424 | NT | 100% | pseudogene (1/408 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC |
| ? | NC_007779 | 655413 = | 0 (0.000) | pseudogene (978/981 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC | |||||
| * | ? | NC_007779 | = 689467 | NA (NA) | 160 (0.950) | 88/434 | NT | 100% | intergenic (‑32/+298) | Y75_RS03405/lnt | IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase |
| ? | NC_007779 | = 701992 | 0 (0.000) | coding (25/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 1106373 = | NA (NA) | 10 (0.060) | 5/412 | NT | 51.3% | coding (174/914 nt) | Y75_RS05455 | IS3‑like element IS2 family transposase |
| ? | NC_007779 | 1106739 = | 10 (0.060) | coding (168/361 nt) | Y75_RS05455 | IS3‑like element IS2 family transposase | |||||
| * | ? | NC_007779 | 1209367 = | 83 (0.490) | 114 (0.730) | 78/402 | NT | 61.6% | coding (290/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | 1211196 = | 65 (0.420) | intergenic (‑6/‑66) | Y75_RS06035/pinE | tail fiber protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 83 (0.490) | 71 (0.460) | 50/402 | NT | 50.0% | coding (305/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | = 1211179 | 65 (0.420) | coding (12/495 nt) | Y75_RS06035 | tail fiber protein | |||||
| * | ? | NC_007779 | 1294773 = | 230 (1.370) | 26 (0.160) | 25/434 | NT | 10.2% | intergenic (‑274/‑331) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 2176983 = | NA (NA) | intergenic (‑3/‑32) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1294776 | 234 (1.400) | 24 (0.140) | 20/434 | NT | 9.3% | intergenic (‑277/‑328) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1301040 | 0 (0.000) | 137 (0.940) +28 bp |
80/378 | NT | 100% | intergenic (+218/‑45) | ychE/Y75_RS06530 | NAAT family transporter YchE/IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 4311564 | NA (NA) | pseudogene (914/921 nt) | alsK | allose kinase | |||||
| * | ? | NC_007779 | 1302408 = | 0 (0.000) | 163 (0.970) | 87/434 | NT | 100% | intergenic (+50/‑488) | Y75_RS06530/oppA | IS3‑like element IS2 family transposase/oligopeptide ABC transporter substrate‑binding protein OppA |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1406268 = | 0 (0.000) | 135 (0.810) | 78/434 | NT | 100% | coding (12/1311 nt) | Y75_RS07065 | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 2176982 | 0 (0.000) | 193 (1.180) | 94/424 | NT | 100% | intergenic (‑2/‑33) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 2178182 = | 0 (0.000) | pseudogene (202/207 nt) | gatA | PTS galactitol transporter subunit IIA | |||||
| * | ? | NC_007779 | = 2380506 | 93 (0.550) | 9 (0.050) | 9/428 | NT | 8.9% | coding (127/963 nt) | menC | o‑succinylbenzoate synthase |
| ? | NC_007779 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/Y75_RS12570 | nucleoside permease NupC/IS4‑like element IS421 family transposase | |||||
| * | ? | NC_007779 | 3024216 = | 150 (0.890) | 9 (0.050) | 9/434 | NT | 5.7% | coding (1210/1401 nt) | xanQ | xanthine/proton symporter XanQ |
| ? | NC_007779 | = 3129996 | NA (NA) | intergenic (+146/+1) | Y75_RS15530/Y75_RS15535 | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein | |||||
| * | ? | NC_007779 | 3592355 = | 1 (0.010) | 147 (0.880) | 78/434 | NT | 99.3% | coding (128/1431 nt) | Y75_RS17825 | YdgA family protein |
| ? | NC_007779 | 3746911 = | NA (NA) | intergenic (‑3/‑32) | Y75_RS18580/Y75_RS18585 | tryptophan permease/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 3592358 | 1 (0.010) | 174 (1.040) | 101/434 | NT | 99.4% | coding (125/1431 nt) | Y75_RS17825 | YdgA family protein |
| ? | NC_007779 | = 3748105 | NA (NA) | intergenic (+146/+3) | Y75_RS18585/tnaB | IS5‑like element IS5 family transposase/low affinity tryptophan permease TnaB | |||||
| * | ? | NC_007779 | 3748316 = | 0 (0.000) | 217 (1.290) | 100/434 | NT | 100% | pseudogene (665/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | = 4056987 | NA (NA) | coding (391/417 nt) | Y75_RS20060 | hypothetical protein | |||||
| * | ? | NC_007779 | = 3748324 | 1 (0.010) | 164 (0.980) | 88/434 | NT | 99.4% | pseudogene (657/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | 3876427 = | NA (NA) | 4 (0.030) | 4/412 | NT | 16.7% | coding (1806/4134 nt) | Y75_RS19225 | RHS element protein RhsA |
| ? | NC_007779 | 3876545 = | 21 (0.130) | coding (1688/4134 nt) | Y75_RS19225 | RHS element protein RhsA | |||||
| * | ? | NC_007779 | = 3986215 | 0 (0.000) | 259 (1.540) | 121/434 | NT | 100% | coding (240/567 nt) | slp | outer membrane lipoprotein Slp |
| ? | NC_007779 | 3987185 = | NA (NA) | pseudogene (3/379 nt) | Y75_RS19720 | hypothetical protein | |||||
| * | ? | NC_007779 | 3987185 = | NA (NA) | 38 (0.230) | 34/434 | NT | 19.5% | pseudogene (3/379 nt) | Y75_RS19720 | hypothetical protein |
| ? | NC_007779 | 4315241 = | 157 (0.940) | coding (418/1533 nt) | Y75_RS21330 | D‑allose ABC transporter ATP‑binding protein AlsA | |||||
| * | ? | NC_007779 | = 4019417 | 131 (0.780) | 4 (0.030) | 4/412 | NT | 5.4% | coding (1807/4236 nt) | Y75_RS19860 | rhs element protein RhsB |
| ? | NC_007779 | = 4019535 | 17 (0.110) | coding (1689/4236 nt) | Y75_RS19860 | rhs element protein RhsB | |||||
| * | ? | NC_007779 | 4056221 = | NA (NA) | 181 (1.080) | 97/432 | NT | 97.3% | intergenic (‑210/+14) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase |
| ? | NC_007779 | 4370787 = | 5 (0.030) | pseudogene (667/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4056987 | NA (NA) | 186 (1.110) | 105/434 | NT | 98.4% | coding (391/417 nt) | Y75_RS20060 | hypothetical protein |
| ? | NC_007779 | = 4370795 | 3 (0.020) | pseudogene (659/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4310362 | 0 (0.000) | 133 (0.810) | 62/426 | NT | 100% | intergenic (‑286/‑33) | yjcS/Y75_RS21310 | alkyl sulfatase YjcS/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 4311562 = | 0 (0.000) | pseudogene (916/921 nt) | alsK | allose kinase | |||||
| * | ? | NC_007779 | = 4311557 | NA (NA) | 50 (0.300) | 41/434 | NT | 24.3% | pseudogene (921/921 nt) | alsK | allose kinase |
| ? | NC_007779 | = 4315244 | 156 (0.930) | coding (415/1533 nt) | Y75_RS21330 | D‑allose ABC transporter ATP‑binding protein AlsA | |||||