breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 697,673 G→T 72.3% A121S (GCT→TCT)  SAS0619 → putative membrane protein
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 2,727,708 G→A 22.3% T430I (ACC→ATC)  SAS2534 ← hypothetical protein
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ BX571857 1866952 1867012 61 3 [2] [2] 3 SAS1718/SAS1719 putative lipoprotein/putative lipoprotein
* * ÷ BX571857 1878507 1878563 57 3 [2] [2] 3 SAS1729 conserved hypothetical protein (pseudogene)
* * ÷ BX571858 20652 20652 1 45 [0] [0] NA pSAS24/– putative exported protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571858 1 =0 (0.000)36 (1.270) 30/172 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–