mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5864480 | 64 (1.300) | 3 (0.070) | 3/234 | NT | 4.8% | coding (1727/2253 nt) | cadA‑III | cadmium translocating P‑type ATPase |
| ? | NC_002947 | = 5864515 | 58 (1.260) | coding (1692/2253 nt) | cadA‑III | cadmium translocating P‑type ATPase | |||||
| * | ? | NC_002947 | = 4961810 | 65 (1.330) | 3 (0.070) | 3/234 | NT | 4.3% | coding (673/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | = 4961828 | 74 (1.610) | coding (655/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC | |||||
| * | ? | NC_002947 | = 4925156 | 69 (1.410) | 3 (0.060) | 3/236 | NT | 4.7% | intergenic (‑62/+57) | PP_4334/PP_4335 | ParA family protein/flagellar motor protein |
| ? | NC_002947 | = 4925192 | 56 (1.210) | intergenic (‑98/+21) | PP_4334/PP_4335 | ParA family protein/flagellar motor protein | |||||
| * | ? | NC_002947 | = 4731521 | 66 (1.350) | 3 (0.060) | 3/246 | NT | 4.4% | intergenic (‑32/+62) | lpdG/sucB | dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit |
| ? | NC_002947 | = 4731573 | 65 (1.350) | intergenic (‑84/+10) | lpdG/sucB | dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit | |||||
| * | ? | NC_002947 | 4625972 = | NA (NA) | 2 (0.060) +38 bp |
4/174 | NT | 4.8% | intergenic (+4519/+45) | PP_5654/PP_4091 | phosphotriesterase/transposase |
| ? | NC_002947 | 5401729 = | 57 (1.160) | intergenic (+1057/+111) | PP_4743/PP_4745 | hypothetical protein/transposase | |||||
| * | ? | NC_002947 | = 4417241 | 57 (1.160) | 3 (0.060) | 3/236 | NT | 4.8% | coding (90/552 nt) | PP_3905 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 4417285 | 65 (1.400) | coding (134/552 nt) | PP_3905 | LuxR family transcriptional regulator | |||||
| * | ? | NC_002947 | 3268649 = | 35 (0.710) | 4 (0.080) | 3/244 | NT | 10.4% | coding (807/1203 nt) | PP_2867 | pyridine nucleotide‑disulphide oxidoreductase family protein |
| ? | NC_002947 | 3268672 = | 35 (0.730) | coding (784/1203 nt) | PP_2867 | pyridine nucleotide‑disulphide oxidoreductase family protein | |||||
| * | ? | NC_002947 | 3142930 = | 29 (0.590) | 4 (0.090) | 3/230 | NT | 12.0% | coding (836/1029 nt) | PP_2758 | ribose ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3142976 = | 32 (0.710) | coding (882/1029 nt) | PP_2758 | ribose ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | 2049185 = | 64 (1.300) | 3 (0.060) | 3/242 | NT | 4.7% | coding (130/372 nt) | PP_1822 | hypothetical protein |
| ? | NC_002947 | 2049220 = | 60 (1.260) | coding (95/372 nt) | PP_1822 | hypothetical protein | |||||
| * | ? | NC_002947 | 1968074 = | 61 (1.240) | 4 (0.090) | 3/224 | NT | 6.4% | intergenic (‑42/+116) | yciK/gph | putative oxidoreductase/phosphoglycolate phosphatase |
| ? | NC_002947 | 1968159 = | 62 (1.410) | intergenic (‑127/+31) | yciK/gph | putative oxidoreductase/phosphoglycolate phosphatase | |||||