breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 278,744 +A intergenic (‑239/+75) PP_0224 ← / ← sctC DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA 307,866 +C intergenic (+881/‑988) hslO → / → PP_0254 molecular chaperone HslO/hypothetical protein
RA 336,125 +T coding (210/237 nt) PP_0278 → hypothetical protein
RA 353,067 A→G intergenic (+34/+84) hisF → / ← cbcV imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA 499,203 A→G intergenic (+47/‑249) uhpA → / → PP_0411 two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,126,647 +C intergenic (‑101/+48) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
RA 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein
RA 1,499,480 2 bp→AC intergenic (+57/‑106) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,499,508 +C intergenic (+85/‑79) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,932,640 +C intergenic (‑107/+43) rluA ← / ← minE bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA 2,958,523 C→T A428V (GCA→GTA)  PP_2589 → aldehyde dehydrogenase family protein
RA 3,020,819 G→T A453S (GCC→TCC)  PP_2638 → cellulose synthase operon protein C
JC 3,586,302 (GGTGTCGGCA)1→2 coding (496/1329 nt) benK → benzoate MFS transporter
RA 3,745,930 G→A E406K (GAA→AAA)  paoC → aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA 3,845,705 +G intergenic (‑72/+26) PP_3394 ← / ← PP_3395 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA 3,951,159 T→C intergenic (‑123/+72) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 3,951,161 A→T intergenic (‑125/+70) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 4,586,030 2 bp→TC intergenic (+113/+101) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,035 +G intergenic (+118/+97) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,057 +C intergenic (+140/+75) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,740,811 (T)7→6 intergenic (+48/+705) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,232 C→T intergenic (+469/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,235 C→T intergenic (+472/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,238 C→G intergenic (+475/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,240 2 bp→CT intergenic (+477/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,246 Δ1 bp intergenic (+483/+270) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,255 C→T intergenic (+492/+261) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,257 A→C intergenic (+494/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,260 2 bp→GC intergenic (+497/+255) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 +T intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,874,327 A→T L69Q (CTG→CAG)  PP_4283 ← GntR family transcriptional regulator
JC 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE hypothetical protein/flagellar hook protein FlgE
JC 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 5,674,751 +G intergenic (+113/+27) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA 5,674,753 G→C intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC 5,681,415 +CGGG intergenic (‑133/+71) PP_4986 ← / ← PP_4987 hemolysin III family channel protein/putative Chemotaxis protein
RA 6,013,885 T→C intergenic (+90/+20) xpt → / ← PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171337–172964 176328–175401 2438–4992 112 [109] [109] 113 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176614–178394 181743–180831 2438–5130 113 [109] [111] 112 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 207521–208129 210101–208220 92–2581 112 [109] [111] 112 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 215440–216064 216866–216155 92–1427 114 [108] [109] 112 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 528002–528480 529644–528961 482–1643 113 [110] [108] 112 PP_23SC 23S ribosomal RNA
* * ÷ NC_002947 699758–701568 702706–702049 482–2949 117 [111] [109] 114 [PP_23SD] [PP_23SD]
* * ÷ NC_002947 741537–742158 743328–742552 395–1792 113 [111] [110] 112 PP_0635 PP_0635
* * ÷ NC_002947 744996–745904 746896–746028 125–1901 113 [110] [110] 114 [PP_0637]–PP_0638 [PP_0637],PP_0638
* * ÷ NC_002947 1296523–1297274 1298495–1297530 257–1973 113 [111] [111] 113 PP_1133 PP_1133
* * ÷ NC_002947 1327169–1328842 1330472–1329515 674–3304 112 [111] [110] 113 PP_23SE–PP_5SE PP_23SE,PP_5SE
* * ÷ NC_002947 1440053–1440789 1442005–1441045 257–1953 112 [110] [110] 112 PP_1260 PP_1260
* * ÷ NC_002947 2085826–2087128 2087128 1–1303 112 [111] [111] 112 [PP_1865] [PP_1865]
* * ÷ NC_002947 2256590–2258161 2258161 1–1572 112 [110] [109] 113 PP_1990 PP_1990
* * ÷ NC_002947 2413048–2414429 2414429 1–1382 115 [111] [110] 113 [PP_2114] [PP_2114]
* * ÷ NC_002947 2529179–2530845 2530845 1–1667 113 [109] [111] 112 PP_2218–[PP_2219] PP_2218,[PP_2219]
* * ÷ NC_002947 2551380–2552242 2553879–2552915 674–2500 112 [107] [111] 113 [PP_23SF]–PP_5SF [PP_23SF],PP_5SF
* * ÷ NC_002947 2869325–2870653 2870653 1–1329 113 [111] [110] 113 [PP_2522] [PP_2522]
* * ÷ NC_002947 2937728–2938337 2939321–2938593 257–1594 112 [110] [108] 113 [PP_2570] [PP_2570]
* * ÷ NC_002947 3522873–3523446 3525153–3524405 960–2281 114 [109] [110] 112 PP_3113–PP_3115 PP_3113,PP_3114,PP_3115
* * ÷ NC_002947 3826302–3827259 3828242–3827515 257–1941 113 [111] [109] 115 PP_3381 PP_3381
* * ÷ NC_002947 3969339–3969974 3971586–3970994 1021–2248 114 [111] [108] 112 PP_3499–[PP_3501] PP_3499,PP_3500,[PP_3501]
* * ÷ NC_002947 4073727–4074697 4075684–4074953 257–1958 115 [109] [109] 112 PP_3586 PP_3586
* * ÷ NC_002947 4391582–4392362 4393401–4392756 395–1820 113 [110] [109] 112 PP_3868 PP_3868
* * ÷ NC_002947 4486371–4487004 4488625–4488024 1021–2255 112 [110] [111] 113 PP_3979–[PP_3981] PP_3979,PP_3980,[PP_3981]
* * ÷ NC_002947 4493382–4494123 4495642–4495082 960–2261 112 [109] [111] 113 [PP_3984]–PP_3986 [PP_3984],PP_3985,PP_3986
* * ÷ NC_002947 4536260–4537136 4538186–4537260 125–1927 113 [110] [111] 114 PP_4024–[PP_4025] PP_4024,[PP_4025]
* * ÷ NC_002947 4908253–4909573 4909573 1–1321 113 [110] [111] 112 [PP_4318] [PP_4318]
* * ÷ NC_002947 5033199–5033853 5035459–5034873 1021–2261 116 [111] [109] 114 PP_4437–[PP_4439] PP_4437,PP_4438,[PP_4439]
* * ÷ NC_002947 5036161–5036814 5038406–5037723 910–2246 113 [110] [109] 112 PP_4441–[PP_4443] PP_4441,PP_4442,[PP_4443]
* * ÷ NC_002947 5222626–5223579 5224574–5223835 257–1949 112 [111] [110] 113 PP_4603 PP_4603
* * ÷ NC_002947 5307633–5308391 5310717–5309064 674–3085 113 [110] [109] 114 PP_23SG PP_23SG
* * ÷ NC_002947 5401803–5402730 5403733–5402854 125–1931 114 [110] [109] 113 [PP_4745]–PP_4746 [PP_4745],PP_4746
* * ÷ NC_002947 5453079–5453803 5454654–5454059 257–1576 113 [107] [111] 113 [PP_4791] [PP_4791]
* * ÷ NC_002947 6152972–6153660 6155220–6154569 910–2249 112 [111] [110] 112 [PP_5396]–PP_5398 [PP_5396],PP_5397,PP_5398