mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 307,866 | +C | intergenic (+881/‑988) | hslO → / → PP_0254 | molecular chaperone HslO/hypothetical protein |
| RA | 336,125 | +T | coding (210/237 nt) | PP_0278 → | hypothetical protein |
| RA | 353,067 | A→G | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 499,203 | A→G | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| RA | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,419,549 | +C | intergenic (‑38/+98) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| RA | 1,499,480 | 2 bp→AC | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,498 | 1 bp→CG | intergenic (+75/‑89) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,508 | +C | intergenic (+85/‑79) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,932,640 | +C | intergenic (‑107/+43) | rluA ← / ← minE | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor |
| RA | 2,958,523 | C→T | A428V (GCA→GTA) | PP_2589 → | aldehyde dehydrogenase family protein |
| RA | 3,020,819 | G→T | A453S (GCC→TCC) | PP_2638 → | cellulose synthase operon protein C |
| JC | 3,586,302 | (GGTGTCGGCA)1→2 | coding (496/1329 nt) | benK → | benzoate MFS transporter |
| RA | 3,745,930 | G→A | E406K (GAA→AAA) | paoC → | aromatic aldehyde dehydrogenase molybdopterin‑binding subunit |
| RA | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| RA | 3,951,159 | T→C | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,951,161 | A→T | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,035 | +G | intergenic (+118/+97) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,057 | +C | intergenic (+140/+75) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,740,811 | (T)7→6 | intergenic (+48/+705) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | 2 bp→GC | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | +T | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| MC JC | 4,874,346 | Δ15 bp | coding (173‑187/756 nt) | PP_4283 ← | GntR family transcriptional regulator |
| JC | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| JC | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 5,674,751 | +G | intergenic (+113/+27) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,674,753 | G→C | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| JC | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| RA | 6,013,885 | T→C | intergenic (+90/+20) | xpt → / ← PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171342–172964 | 176343–175408 | 2445–5002 | 115 [113] | [113] 116 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176619–178394 | 181743–180838 | 2445–5125 | 116 [113] | [113] 114 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 207502–208207 | 208934–208220 | 14–1433 | 114 [112] | [113] 114 | PP_0168 | putative surface adhesion protein |
| * | * | ÷ | NC_002947 | 215430–216142 | 216875–216155 | 14–1446 | 114 [113] | [112] 114 | PP_0168 | putative surface adhesion protein |
| * | * | ÷ | NC_002947 | 527994–528614 | 529644–528968 | 355–1651 | 118 [111] | [113] 114 | PP_23SC | 23S ribosomal RNA |
| * | * | ÷ | NC_002947 | 699758–701702 | 702699–702056 | 355–2942 | 114 [108] | [112] 117 | [PP_23SD] | [PP_23SD] |
| * | * | ÷ | NC_002947 | 741539–742211 | 743322–742539 | 329–1784 | 115 [112] | [113] 114 | PP_0635 | PP_0635 |
| * | * | ÷ | NC_002947 | 744996–745904 | 746896–746021 | 118–1901 | 114 [112] | [112] 115 | [PP_0637]–PP_0638 | [PP_0637],PP_0638 |
| * | * | ÷ | NC_002947 | 1296539–1297317 | 1298485–1297506 | 190–1947 | 115 [113] | [113] 115 | PP_1133 | PP_1133 |
| * | * | ÷ | NC_002947 | 1327176–1328842 | 1330463–1329522 | 681–3288 | 115 [112] | [113] 118 | PP_23SE–[PP_5SE] | PP_23SE,[PP_5SE] |
| * | * | ÷ | NC_002947 | 1440054–1440832 | 1442001–1441021 | 190–1948 | 120 [113] | [112] 114 | PP_1260 | PP_1260 |
| * | * | ÷ | NC_002947 | 2551377–2552242 | 2553861–2552922 | 681–2485 | 114 [112] | [113] 119 | [PP_23SF]–[PP_5SF] | [PP_23SF],[PP_5SF] |
| * | * | ÷ | NC_002947 | 2937728–2938361 | 2939329–2938550 | 190–1602 | 115 [113] | [113] 114 | [PP_2570] | [PP_2570] |
| * | * | ÷ | NC_002947 | 3522875–3523461 | 3525149–3524450 | 990–2275 | 115 [113] | [113] 116 | PP_3113–[PP_3115] | PP_3113,PP_3114,[PP_3115] |
| * | * | ÷ | NC_002947 | 3826306–3827283 | 3828246–3827472 | 190–1941 | 114 [111] | [112] 114 | PP_3381 | PP_3381 |
| * | * | ÷ | NC_002947 | 3969329–3970010 | 3971589–3970838 | 829–2261 | 115 [112] | [112] 114 | PP_3499–[PP_3501] | PP_3499,PP_3500,[PP_3501] |
| * | * | ÷ | NC_002947 | 4073742–4074721 | 4075686–4074910 | 190–1945 | 114 [111] | [109] 114 | PP_3586 | PP_3586 |
| * | * | ÷ | NC_002947 | 4391575–4392375 | 4393394–4392703 | 329–1820 | 114 [113] | [113] 115 | PP_3868 | PP_3868 |
| * | * | ÷ | NC_002947 | 4486368–4487040 | 4488613–4487868 | 829–2246 | 115 [113] | [113] 117 | PP_3979–[PP_3981] | PP_3979,PP_3980,[PP_3981] |
| * | * | ÷ | NC_002947 | 4493396–4494078 | 4495637–4495067 | 990–2242 | 114 [111] | [113] 114 | [PP_3984]–PP_3986 | [PP_3984],PP_3985,PP_3986 |
| * | * | ÷ | NC_002947 | 4536271–4537143 | 4538188–4537260 | 118–1918 | 114 [113] | [113] 117 | PP_4024–[PP_4025] | PP_4024,[PP_4025] |
| * | * | ÷ | NC_002947 | 5033204–5033889 | 5035475–5034717 | 829–2272 | 114 [112] | [112] 114 | PP_4437–[PP_4439] | PP_4437,PP_4438,[PP_4439] |
| * | * | ÷ | NC_002947 | 5036160–5036779 | 5038403–5037742 | 964–2244 | 115 [112] | [113] 115 | PP_4441–[PP_4443] | PP_4441,PP_4442,[PP_4443] |
| * | * | ÷ | NC_002947 | 5222616–5223603 | 5224572–5223792 | 190–1957 | 114 [113] | [113] 115 | PP_4603 | PP_4603 |
| * | * | ÷ | NC_002947 | 5307639–5308384 | 5310710–5309064 | 681–3072 | 116 [108] | [113] 115 | PP_23SG | PP_23SG |
| * | * | ÷ | NC_002947 | 5401795–5402730 | 5403723–5402847 | 118–1929 | 114 [113] | [113] 115 | [PP_4745]–PP_4746 | [PP_4745],PP_4746 |
| * | * | ÷ | NC_002947 | 5453075–5453846 | 5454655–5454035 | 190–1581 | 115 [112] | [112] 117 | [PP_4791] | [PP_4791] |
| * | * | ÷ | NC_002947 | 6152980–6153641 | 6155213–6154604 | 964–2234 | 114 [112] | [113] 115 | [PP_5396]–PP_5398 | [PP_5396],PP_5397,PP_5398 |