breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 278,744 +A intergenic (‑239/+75) PP_0224 ← / ← sctC DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA 307,866 +C intergenic (+881/‑988) hslO → / → PP_0254 molecular chaperone HslO/hypothetical protein
RA 336,125 +T coding (210/237 nt) PP_0278 → hypothetical protein
RA 353,067 A→G intergenic (+34/+84) hisF → / ← cbcV imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA 499,203 A→G intergenic (+47/‑249) uhpA → / → PP_0411 two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA 1,126,647 +C intergenic (‑101/+48) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
RA 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein
RA 1,499,480 2 bp→AC intergenic (+57/‑106) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,499,508 +C intergenic (+85/‑79) trpS → / → zapE tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA 1,932,640 +C intergenic (‑107/+43) rluA ← / ← minE bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA 2,958,523 C→T A428V (GCA→GTA)  PP_2589 → aldehyde dehydrogenase family protein
RA 3,020,819 G→T A453S (GCC→TCC)  PP_2638 → cellulose synthase operon protein C
JC 3,586,302 (GGTGTCGGCA)1→2 coding (496/1329 nt) benK → benzoate MFS transporter
RA 3,745,930 G→A E406K (GAA→AAA)  paoC → aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA 3,845,705 +G intergenic (‑72/+26) PP_3394 ← / ← PP_3395 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA 3,951,159 T→C intergenic (‑123/+72) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 3,951,161 A→T intergenic (‑125/+70) PP_3486 ← / ← PP_3487 cytochrome c/hypothetical protein
RA 4,586,030 2 bp→TC intergenic (+113/+101) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,035 +G intergenic (+118/+97) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,586,057 +C intergenic (+140/+75) PP_4061 → / ← PP_4063 hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA 4,740,811 (T)7→6 intergenic (+48/+705) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,255 C→T intergenic (+492/+261) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,257 A→C intergenic (+494/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,260 2 bp→GC intergenic (+497/+255) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 +T intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
JC 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE hypothetical protein/flagellar hook protein FlgE
JC 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
RA 5,674,751 +G intergenic (+113/+27) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA 5,674,753 G→C intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC 5,681,415 +CGGG intergenic (‑133/+71) PP_4986 ← / ← PP_4987 hemolysin III family channel protein/putative Chemotaxis protein
RA 6,013,885 T→C intergenic (+90/+20) xpt → / ← PP_5266 xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 171349–175018 176325–175414 397–4977 114 [109] [111] 114 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ NC_002947 176624–180448 181726–180844 397–5103 115 [113] [111] 115 PP_16SB–[PP_r01] PP_16SB,PP_23SB,[PP_r01]
* * ÷ NC_002947 207515–208214 208923–208221 8–1409 116 [113] [112] 114 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 215449–216149 216864–216156 8–1416 114 [113] [113] 118 PP_0168 putative surface adhesion protein
* * ÷ NC_002947 528005–528578 529627–528974 397–1623 114 [113] [111] 114 PP_23SC 23S ribosomal RNA
* * ÷ NC_002947 699760–701666 702698–702062 397–2939 118 [113] [111] 115 [PP_23SD] [PP_23SD]
* * ÷ NC_002947 741517–742221 743311–742539 319–1795 114 [112] [113] 118 [PP_0635] [PP_0635]
* * ÷ NC_002947 745001–745904 746893–746028 125–1893 114 [111] [110] 116 [PP_0637]–PP_0638 [PP_0637],PP_0638
* * ÷ NC_002947 1296552–1297157 1298482–1297532 376–1931 116 [113] [112] 117 PP_1133 PP_1133
* * ÷ NC_002947 1327177–1328839 1330461–1329528 690–3285 114 [109] [108] 114 PP_23SE–[PP_5SE] PP_23SE,[PP_5SE]
* * ÷ NC_002947 1440056–1440672 1441997–1441047 376–1942 114 [108] [113] 114 PP_1260 PP_1260
* * ÷ NC_002947 2551375–2552239 2553871–2552928 690–2497 116 [113] [113] 118 [PP_23SF]–PP_5SF [PP_23SF],PP_5SF
* * ÷ NC_002947 2937731–2938335 2939336–2938710 376–1606 116 [107] [111] 115 [PP_2570] [PP_2570]
* * ÷ NC_002947 3522879–3523680 3525140–3524402 723–2262 115 [111] [112] 114 PP_3113–[PP_3115] PP_3113,PP_3114,[PP_3115]
* * ÷ NC_002947 3826303–3827257 3828237–3827632 376–1935 114 [113] [111] 114 PP_3381 PP_3381
* * ÷ NC_002947 3969339–3970128 3971575–3970803 676–2237 118 [113] [113] 114 PP_3499–[PP_3501] PP_3499,PP_3500,[PP_3501]
* * ÷ NC_002947 4073725–4074695 4075683–4075070 376–1959 116 [113] [110] 114 PP_3586 PP_3586
* * ÷ NC_002947 4391595–4392375 4393385–4392693 319–1791 116 [113] [113] 114 [PP_3868] [PP_3868]
* * ÷ NC_002947 4486373–4487158 4488615–4487833 676–2243 114 [113] [113] 116 PP_3979–[PP_3981] PP_3979,PP_3980,[PP_3981]
* * ÷ NC_002947 4493389–4494126 4495638–4494848 723–2250 115 [112] [113] 114 [PP_3984]–PP_3986 [PP_3984],PP_3985,PP_3986
* * ÷ NC_002947 4536275–4537136 4538177–4537260 125–1903 119 [112] [113] 114 PP_4024–[PP_4025] PP_4024,[PP_4025]
* * ÷ NC_002947 5033205–5034007 5035455–5034682 676–2251 114 [113] [111] 114 PP_4437–[PP_4439] PP_4437,PP_4438,[PP_4439]
* * ÷ NC_002947 5036170–5036800 5038404–5037768 969–2235 114 [111] [111] 115 PP_4441–[PP_4443] PP_4441,PP_4442,[PP_4443]
* * ÷ NC_002947 5222614–5223577 5224561–5223952 376–1948 116 [111] [112] 115 PP_4603 PP_4603
* * ÷ NC_002947 5307643–5308378 5310698–5309067 690–3056 115 [113] [110] 115 PP_23SG PP_23SG
* * ÷ NC_002947 5401814–5402730 5403717–5402854 125–1904 114 [113] [113] 116 [PP_4745]–PP_4746 [PP_4745],PP_4746
* * ÷ NC_002947 5453075–5453686 5454664–5454061 376–1590 114 [110] [113] 115 [PP_4791] [PP_4791]
* * ÷ NC_002947 6152984–6153615 6155204–6154583 969–2221 115 [113] [111] 114 [PP_5396]–PP_5398 [PP_5396],PP_5397,PP_5398