mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,990,787 | 0 | G | A | 61.3% | 18.9 / 30.5 | 31 | intergenic (+103/‑443) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 1,903,731 | 0 | G | C | 54.5% | 2.9 / 12.8 | 11 | intergenic (+214/‑57) | PP_1703/nirB | assimilatory nitrate reductase/sulfite reductase/nitrite reductase large subunit |
| * | NC_002947 | 2,122,813 | 0 | G | T | 53.8% | 0.2 / 10.6 | 13 | V667L (GTG→TTG) | PP_1885 | hypothetical protein |
| * | NC_002947 | 5,990,889 | 0 | A | C | 51.7% | ‑4.6 / 41.7 | 29 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 195,634 | 0 | C | T | 47.8% | 8.8 / 25.5 | 23 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 195,559 | 0 | C | A | 41.7% | 14.6 / 24.0 | 24 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 198,430 | 0 | T | C | 41.7% | 3.3 / 10.6 | 12 | N1312N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 1,327,127 | 0 | C | T | 41.5% | 34.6 / 45.3 | 41 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,253,466 | 0 | A | C | 40.5% | 23.0 / 12.0 | 44 | L178R (CTG→CGG) | PP_3726 | enoyl‑CoA hydratase/isomerase family protein |
| * | NC_002947 | 1,617,819 | 0 | C | T | 40.0% | 10.4 / 18.4 | 20 | intergenic (‑32/+141) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 1,617,824 | 0 | C | G | 40.0% | 11.3 / 24.5 | 20 | intergenic (‑37/+136) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 4,350,671 | 0 | A | G | 40.0% | 16.4 / 26.5 | 25 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 196,351 | 0 | C | G | 38.9% | 12.5 / 10.6 | 18 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 3,992,882 | 0 | G | C | 36.4% | 45.8 / 16.5 | 34 | G237G (GGC→GGG) | PP_3517 | hypothetical protein |
| * | NC_002947 | 1,617,914 | 0 | C | G | 29.4% | 23.4 / 11.6 | 17 | intergenic (‑127/+46) | PP_1417/PP_1418 | tricarboxylate transport protein TctB/tricarboxylate transport protein TctC |
| * | NC_002947 | 699,725 | 0 | A | G | 27.3% | 31.0 / 12.4 | 23 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 5,990,781 | 0 | G | T | 25.4% | 138.2 / 38.8 | 72 | intergenic (+97/‑449) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,628,431 | 0 | C | . | 25.0% | 40.0 / 10.1 | 16 | coding (1044/1758 nt) | PP_4944 | carbamoyltransferase |
| * | NC_002947 | 4,947,381 | 0 | A | G | 22.2% | 161.0 / 46.9 | 91 | intergenic (+774/+24) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| * | NC_002947 | 4,947,384 | 0 | G | A | 21.7% | 182.0 / 47.8 | 92 | intergenic (+777/+21) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |