mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,127 | 0 | C | T | 60.0% | ‑6.0 / 20.3 | 20 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 91,505 | 0 | C | A | 58.3% | 6.5 / 15.4 | 12 | intergenic (+56/+65) | PP_0081/trpA | hypothetical protein/tryptophan synthase subunit alpha |
| * | NC_002947 | 4,350,671 | 0 | A | G | 55.9% | ‑1.2 / 85.5 | 68 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 2,103,716 | 0 | A | C | 44.8% | ‑0.8 / 11.5 | 30 | L186R (CTG→CGG) | PP_1878 | hypothetical protein |
| * | NC_002947 | 3,910,517 | 0 | T | G | 42.9% | 22.5 / 12.8 | 42 | V167G (GTG→GGG) | PP_3450 | TPR repeat‑containing protein |
| * | NC_002947 | 3,595,316 | 0 | C | A | 40.5% | 56.1 / 10.3 | 38 | F129L (TTC→TTA) | PP_3171 | hypothetical protein |
| * | NC_002947 | 5,231,161 | 0 | G | C | 38.1% | 7.1 / 12.1 | 21 | intergenic (‑133/+43) | PP_4606/PP_4607 | ferric siderophore receptor/transmembrane sensor |
| * | NC_002947 | 3,992,881 | 0 | A | C | 37.1% | 41.0 / 11.2 | 35 | F238V (TTC→GTC) | PP_3517 | hypothetical protein |
| * | NC_002947 | 196,351 | 0 | C | G | 31.8% | 28.7 / 17.7 | 22 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 6,047,980 | 0 | C | A | 26.8% | 111.8 / 11.8 | 56 | A37S (GCC→TCC) | PP_5298 | glutamine amidotransferase |
| * | NC_002947 | 5,990,867 | 0 | C | A | 26.3% | 41.3 / 10.6 | 19 | intergenic (+183/‑363) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 56,295 | 0 | C | . | 25.0% | 41.1 / 10.3 | 16 | coding (1333/1467 nt) | PP_0049 | hypothetical protein |
| * | NC_002947 | 56,296 | 0 | T | . | 25.0% | 37.7 / 10.8 | 16 | coding (1332/1467 nt) | PP_0049 | hypothetical protein |
| * | NC_002947 | 56,297 | 0 | T | . | 25.0% | 37.4 / 10.8 | 16 | coding (1331/1467 nt) | PP_0049 | hypothetical protein |
| * | NC_002947 | 5,990,889 | 0 | A | C | 23.8% | 31.2 / 10.4 | 26 | intergenic (+205/‑341) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 3,680,728 | 0 | A | . | 20.0% | 52.5 / 10.2 | 20 | coding (356/510 nt) | PP_3243 | GNAT family acetyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2474067 = | 9 (0.280) | 5 (0.220) | 3/186 | 2.0 | 34.1% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2474191 = | 13 (0.570) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
| * | ? | NC_002947 | 3627303 = | 19 (0.590) | 3 (0.090) | 3/262 | 2.7 | 11.8% | coding (150/1263 nt) | PP_3195 | hypothetical protein |
| ? | NC_002947 | = 5969975 | 26 (0.810) | coding (81/339 nt) | glnK | NRII(GlnL/NtrB) phosphatase activator | |||||
| * | ? | NC_002947 | 2553842 = | NA (NA) | 3 (0.090) | 3/264 | 2.7 | 6.1% | noncoding (1161/2902 nt) | PP_23SF | 23S ribosomal RNA |
| ? | NC_002947 | 3086810 = | 46 (1.430) | coding (265/987 nt) | PP_2693 | putative Dipeptidase | |||||