mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 148,861 | G→C | R147G (CGC→GGC) | yadM ← | putative fimbrial‑like adhesin protein |
| RA | 3,178,277 | G→T | E27* (GAA→TAA) | yqiC → | BMFP family putative fusogenic protein |
| RA | 3,412,459 | +A | pseudogene (59/66 nt) | yhdW → | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 4,049,665 | A→C | I12S (ATC→AGC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,546,084 | G→T | H18Q (CAC→CAA) | yjiC ← | uncharacterized protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 1836566 | 1837995 | 1430 | 24 [21] | [21] 22 | gdhA | gdhA |
| * | * | ÷ | CP009273 | 3347945 | 3352558 | 4614 | 22 [21] | [21] 22 | gltB–[gltD] | gltB, [gltD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 73 (1.070) | 60/294 | 0.1 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1203246 = | 81 (1.190) | 23 (0.380) | 22/262 | 2.1 | 23.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 74 (1.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 81 (1.190) | 37 (0.610) | 31/262 | 1.1 | 33.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 74 (1.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1390301 = | NA (NA) | 102 (1.500) | 74/294 | 0.0 | 100% | intergenic (‑122/‑32) | ynaI/insH1 | mechanosensitive channel protein, very small conductance/IS5 transposase and trans‑activator |
| ? | CP009273 | = 1539172 | 0 (0.000) | pseudogene (800/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein | |||||
| * | ? | CP009273 | = 1391496 | NA (NA) | 46 (0.690) | 38/290 | 0.9 | 97.9% | intergenic (+147/‑126) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | CP009273 | 1539170 = | 1 (0.010) | pseudogene (802/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein | |||||
| * | ? | CP009273 | 1973060 = | 2 (0.030) | 58 (0.850) | 46/294 | 0.5 | 96.7% | intergenic (‑606/‑174) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1973068 | 4 (0.060) | 65 (0.960) | 55/294 | 0.2 | 94.2% | intergenic (‑614/‑166) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 62 (0.910) | 51/294 | 0.3 | 96.9% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3710988 = | 2 (0.030) | coding (319/975 nt) | ghrB | glyoxylate/hydroxypyruvate reductase B | |||||
| * | ? | CP009273 | = 3710992 | 5 (0.070) | 78 (1.150) | 62/294 | 0.1 | 94.0% | coding (323/975 nt) | ghrB | glyoxylate/hydroxypyruvate reductase B |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||