mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 764,350 | T→C | L306P (CTG→CCG) | mngB → | alpha‑mannosidase |
| MC JC | 1,406,182 | Δ23,060 bp | [ttcA]–[ttcC] | 33 genes [ttcA], intR, ydaQ, rcbA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, tmpR, lomR, insH1, lomR, stfR, tfaR, pinR, ynaE, [ttcC] |
|
| RA | 1,884,224 | G→A | T189I (ACA→ATA) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
| RA | 2,051,591 | G→T | intergenic (‑8/+93) | asnW ← / ← yeeO | tRNA‑Asn/putative multdrug exporter, MATE family |
| RA | 2,129,384 | G→T | R66S (CGT→AGT) | wzb ← | colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase |
| RA | 3,178,277 | G→T | E27* (GAA→TAA) | yqiC → | BMFP family putative fusogenic protein |
| RA | 3,960,189 | C→T | P138L (CCG→CTG) | rho → | transcription termination factor |
| RA | 4,048,383 | C→T | D86N (GAT→AAT) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,546,084 | G→T | H18Q (CAC→CAA) | yjiC ← | uncharacterized protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 1836572 | 1838007 | 1436 | 63 [61] | [61] 63 | gdhA | gdhA |
| * | * | ÷ | CP009273 | 3347915 | 3352576 | 4662 | 62 [60] | [61] 62 | gltB–[gltD] | gltB, [gltD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 248 (2.140) | 132/296 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1973060 = | 4 (0.030) | 121 (1.050) | 89/296 | 0.1 | 96.8% | intergenic (‑606/‑174) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 1973068 | 3 (0.030) | 96 (0.830) | 68/296 | 0.9 | 97.0% | intergenic (‑614/‑166) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||