mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 106 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 221768 | NA (NA) | 14 (0.190) | 9/286 | 8.4 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221780 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 225231 | 70 (0.930) | 12 (0.170) | 8/284 | 8.8 | 15.2% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 4285799 = | 74 (1.340) | 4 (0.070) | 4/218 | 9.1 | 5.1% | noncoding (77/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | = 4286250 | NA (NA) | noncoding (528/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | CP009273 | = 983015 | 64 (0.850) | 7 (0.100) | 7/274 | 9.1 | 10.5% | intergenic (‑577/+26) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| ? | CP009273 | = 983017 | 60 (0.860) | intergenic (‑579/+24) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase | |||||
| * | ? | CP009273 | 1092417 = | 82 (1.090) | 5 (0.100) +47 bp |
3/202 | 9.3 | 8.2% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1092699 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092417 = | 82 (1.090) | 5 (0.100) +47 bp |
3/202 | 9.3 | 8.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1092518 = | 85 (1.130) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 3417182 = | NA (NA) | 12 (0.170) | 7/284 | 9.4 | 14.0% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 3940048 | 77 (1.030) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | 2719559 = | NA (NA) | 12 (0.170) | 7/284 | 9.4 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 350323 | 59 (0.790) | 6 (0.080) | 6/282 | 9.9 | 9.4% | noncoding (14/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 350357 | 59 (0.830) | noncoding (48/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | = 4532507 | 59 (0.790) | 6 (0.090) | 5/278 | 10.4 | 9.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 63 (0.890) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||