mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 209 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 16507 | NA (NA) | 15 (0.160) | 12/280 | 10.0 | NA | noncoding (1121/1345 nt) | IS186 | repeat region |
| ? | CP009273 | = 16511 | NA (NA) | noncoding (1125/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | 224503 = | NA (NA) | 12 (0.120) | 10/282 | 11.0 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 224528 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 3938338 | NA (NA) | 25 (0.260) | 10/284 | 11.1 | 38.3% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 42 (0.410) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 25 (0.260) | 10/284 | 11.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 61 (0.600) | 25 (0.260) | 10/284 | 11.1 | 29.9% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 389927 | 85 (0.840) | 9 (0.100) | 7/270 | 12.3 | 10.8% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | CP009273 | = 389931 | 72 (0.780) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| * | ? | CP009273 | 3580790 = | 88 (0.870) | 6 (0.060) | 6/276 | 13.2 | 6.9% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | CP009273 | 3580824 = | 80 (0.850) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | CP009273 | 2811708 = | 118 (1.170) | 6 (0.060) | 6/280 | 13.3 | 4.9% | intergenic (‑75/+124) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811770 = | 120 (1.250) | intergenic (‑137/+62) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | CP009273 | = 1530164 | 72 (0.710) | 6 (0.060) | 6/280 | 13.3 | 8.3% | intergenic (‑49/+30) | yddE/narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit |
| ? | CP009273 | = 1530177 | 65 (0.680) | intergenic (‑62/+17) | yddE/narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit | |||||
| * | ? | CP009273 | = 758317 | 110 (1.090) | 7 (0.070) | 6/282 | 13.4 | 6.2% | noncoding (100/167 nt) | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 758333 | 108 (1.120) | noncoding (116/167 nt) | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||