mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G | . | 50.0% | 7.8 / 11.0 | 8 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| * | NC_000913 | 2,906,607 | 0 | C | T | 25.8% | 46.8 / 16.0 | 31 | intergenic (+24/+36) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| * | NC_000913 | 2,906,608 | 0 | G | C | 25.8% | 62.2 / 20.0 | 31 | intergenic (+25/+35) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| * | NC_000913 | 2,906,609 | 0 | G | C | 25.8% | 57.0 / 21.3 | 31 | intergenic (+26/+34) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| * | NC_000913 | 2,906,610 | 0 | A | G | 25.8% | 43.9 / 17.3 | 31 | intergenic (+27/+33) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| * | NC_000913 | 2,090,122 | 0 | A | G | 23.1% | 43.3 / 11.1 | 26 | intergenic (+76/‑70) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913 | 2,090,124 | 0 | C | G | 23.1% | 52.7 / 13.7 | 26 | intergenic (+78/‑68) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913 | 1,190,452 | 1 | . | T | 22.2% | 34.1 / 15.3 | 18 | intergenic (‑5/+164) | phoP/purB | response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase |
| * | NC_000913 | 2,090,126 | 0 | C | T | 22.2% | 49.3 / 10.4 | 27 | intergenic (+80/‑66) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913 | 1,104,256 | 0 | C | T | 20.0% | 58.9 / 10.3 | 30 | A102A (GCC→GCT) | csgB | curlin nucleator protein, minor subunit in curli complex |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1097475 | NA (NA) | 2 (0.140) +53 bp |
3/150 | 1.9 | 13.0% | intergenic (+646/+90) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097583 | 23 (0.910) | noncoding (70/88 nt) | serX | tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3948434 | 26 (1.030) | 4 (0.170) | 4/238 | 2.4 | 14.0% | intergenic (+10/+15) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | = 3948439 | 25 (1.060) | intergenic (+15/+10) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | NC_000913 | = 1169379 | 26 (1.030) | 4 (0.170) | 4/234 | 2.4 | 13.9% | intergenic (+49/+33) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| ? | NC_000913 | = 1169384 | 26 (1.130) | intergenic (+54/+28) | bhsA/ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | 3919777 = | 38 (1.500) | 3 (0.130) | 3/240 | 2.8 | 8.7% | coding (81/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| ? | NC_000913 | 3919798 = | 27 (1.140) | coding (60/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit | |||||
| * | ? | NC_000913 | 2801047 = | 23 (0.910) | 3 (0.130) | 3/238 | 2.8 | 12.9% | coding (83/411 nt) | nrdI | NrdEF cluster assembly flavodoxin |
| ? | NC_000913 | 2801066 = | 19 (0.810) | coding (102/411 nt) | nrdI | NrdEF cluster assembly flavodoxin | |||||
| * | ? | NC_000913 | = 49701 | 25 (0.990) | 3 (0.130) | 3/236 | 2.8 | 10.9% | intergenic (+70/‑122) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase |
| ? | NC_000913 | = 49712 | 26 (1.120) | intergenic (+81/‑111) | kefC/folA | potassium:proton antiporter/dihydrofolate reductase | |||||