mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4195732 = | 93 (0.980) | 3 (0.030) | 3/246 | NT | 3.6% | coding (368/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | 4195811 = | 74 (0.830) | coding (289/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | = 4165497 | 106 (1.120) | 4 (0.040) | 4/248 | NT | 3.7% | coding (70/858 nt) | murI | glutamate racemase |
| ? | NC_000913 | = 4165519 | 107 (1.190) | coding (92/858 nt) | murI | glutamate racemase | |||||
| * | ? | NC_000913 | 3995187 = | 114 (1.200) | 3 (0.030) | 3/250 | NT | 2.8% | coding (426/825 nt) | dapF | diaminopimelate epimerase |
| ? | NC_000913 | 3995216 = | 101 (1.120) | coding (455/825 nt) | dapF | diaminopimelate epimerase | |||||
| * | ? | NC_000913 | = 3888212 | 132 (1.390) | 3 (0.030) | 4/240 | NT | 2.3% | intergenic (+20/‑223) | mnmE/tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| ? | NC_000913 | = 3888224 | 131 (1.510) | intergenic (+32/‑211) | mnmE/tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide | |||||
| * | ? | NC_000913 | 3879653 = | 119 (1.260) | 3 (0.030) | 3/252 | NT | 2.6% | coding (467/2415 nt) | gyrB | DNA gyrase, subunit B |
| ? | NC_000913 | 3879674 = | 111 (1.220) | coding (446/2415 nt) | gyrB | DNA gyrase, subunit B | |||||
| * | ? | NC_000913 | 3860610 = | 118 (1.250) | 3 (0.030) | 3/250 | NT | 2.6% | coding (328/894 nt) | yidL | AraC family putative transcriptional regulator |
| ? | NC_000913 | 3860638 = | 108 (1.200) | coding (356/894 nt) | yidL | AraC family putative transcriptional regulator | |||||
| * | ? | NC_000913 | = 2884502 | 111 (1.170) | 4 (0.050) | 4/226 | NT | 3.9% | intergenic (‑364/+51) | casA/ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| ? | NC_000913 | = 2884484 | 99 (1.210) | intergenic (‑346/+69) | casA/ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 | |||||
| * | ? | NC_000913 | 2847210 = | 89 (0.940) | 3 (0.030) | 3/246 | NT | 3.6% | coding (203/924 nt) | hycD | hydrogenase 3, membrane subunit |
| ? | NC_000913 | 2847262 = | 75 (0.840) | coding (151/924 nt) | hycD | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | = 2769764 | 104 (1.100) | 4 (0.040) | 4/248 | NT | 4.0% | coding (62/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 2769802 | 94 (1.050) | coding (100/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 2183430 | 92 (0.970) | 3 (0.030) | 3/244 | NT | 3.6% | coding (222/819 nt) | yegX | putative family 25 glycosyl hydrolase |
| ? | NC_000913 | = 2183460 | 76 (0.860) | coding (192/819 nt) | yegX | putative family 25 glycosyl hydrolase | |||||