mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4621634 = | 150 (1.290) | 4 (0.040) | 4/230 | NT | 2.7% | intergenic (+32/‑135) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase |
| ? | NC_000913 | 4621662 = | 155 (1.440) | intergenic (+60/‑107) | deoD/yjjJ | purine nucleoside phosphorylase 1; nicotinamide 1‑beta‑D‑riboside phosphorylase/putative protein kinase | |||||
| * | ? | NC_000913 | = 4447464 | 139 (1.190) | 3 (0.030) | 3/234 | NT | 2.5% | coding (3353/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4447516 | 108 (0.990) | coding (3405/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | NC_000913 | 4285343 = | NA (NA) | 5 (0.050) | 5/236 | NT | 4.4% | noncoding (42/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4285375 = | 108 (0.980) | noncoding (74/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4272576 | 118 (1.010) | 4 (0.040) | 4/238 | NT | 3.4% | coding (1296/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4272601 | 112 (1.010) | coding (1271/2823 nt) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | = 4231530 | 110 (0.940) | 5 (0.040) | 5/240 | NT | 4.3% | coding (102/273 nt) | yjbD | DUF3811 family protein |
| ? | NC_000913 | = 4231537 | 118 (1.050) | coding (95/273 nt) | yjbD | DUF3811 family protein | |||||
| * | ? | NC_000913 | = 4131689 | 130 (1.110) | 4 (0.040) | 4/230 | NT | 3.2% | coding (1855/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| ? | NC_000913 | = 4131704 | 126 (1.170) | coding (1870/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 | |||||
| * | ? | NC_000913 | = 3899722 | 106 (0.910) | 4 (0.040) | 4/240 | NT | 3.7% | coding (856/1170 nt) | yieL | putative xylanase |
| ? | NC_000913 | = 3899725 | 106 (0.950) | coding (853/1170 nt) | yieL | putative xylanase | |||||
| * | ? | NC_000913 | = 3831978 | 139 (1.190) | 4 (0.040) | 4/230 | NT | 3.0% | coding (1522/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | = 3832025 | 129 (1.200) | coding (1569/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | 2767655 = | 132 (1.130) | 4 (0.040) | 4/226 | NT | 3.2% | intergenic (+300/‑55) | rnlB/yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| ? | NC_000913 | 2767683 = | 120 (1.140) | intergenic (+328/‑27) | rnlB/yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein | |||||
| * | ? | NC_000913 | 2683325 = | 138 (1.180) | 3 (0.030) | 3/234 | NT | 2.3% | coding (463/1194 nt) | yphH | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 2683372 = | 124 (1.140) | coding (510/1194 nt) | yphH | putative DNA‑binding transcriptional regulator | |||||