breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 20 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4241886 =103 (1.150)5 (0.060) 5/238 NT 4.8% coding (369/1476 nt) xylE D‑xylose transporter
?NC_000913 4241903 = 100 (1.150)coding (352/1476 nt) xylE D‑xylose transporter
* ? NC_000913 4200145 =103 (1.150)3 (0.040) 3/224 NT 3.0% intergenic (+51/‑136) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
?NC_000913 4200182 = 101 (1.240)intergenic (+88/‑99) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
* ? NC_000913 4003233 =87 (0.970)4 (0.050) 4/230 NT 4.8% intergenic (‑40/+55) yigG/rarD PRK11371 family inner membrane protein/putative chloramphenical resistance permease
?NC_000913 4003267 = 76 (0.910)intergenic (‑74/+21) yigG/rarD PRK11371 family inner membrane protein/putative chloramphenical resistance permease
* ? NC_000913 = 3888411174 (1.940)4 (0.050) 4/236 NT 2.4% intergenic (+219/‑24) mnmE/tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
?NC_000913 = 3888418 157 (1.830)intergenic (+226/‑17) mnmE/tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
* ? NC_000913 = 3800403161 (1.790)4 (0.050) 4/238 NT 2.5% coding (563/699 nt) waaY lipopolysaccharide core biosynthesis protein
?NC_000913 = 3800415 152 (1.750)coding (551/699 nt) waaY lipopolysaccharide core biosynthesis protein
* ? NC_000913 3726887 =125 (1.390)3 (0.040) 3/224 NT 2.7% intergenic (+5/+37) wecH/yiaA O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains
?NC_000913 3726917 = 100 (1.230)intergenic (+35/+7) wecH/yiaA O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains
* ? NC_000913 3696141 =89 (0.990)3 (0.030) 3/238 NT 3.2% coding (45/189 nt) yhjR DUF2629 family protein
?NC_000913 3696160 = 93 (1.070)coding (26/189 nt) yhjR DUF2629 family protein
* ? NC_000913 = 3499875127 (1.420)6 (0.070) 6/240 NT 4.5% intergenic (+260/‑35) yhfL/frlA small lipoprotein/putative fructoselysine transporter
?NC_000913 = 3499888 129 (1.470)intergenic (+273/‑22) yhfL/frlA small lipoprotein/putative fructoselysine transporter
* ? NC_000913 = 340848993 (1.040)3 (0.030) 3/236 NT 3.4% coding (883/1452 nt) panF pantothenate:sodium symporter
?NC_000913 = 3408518 82 (0.950)coding (912/1452 nt) panF pantothenate:sodium symporter
* ? NC_000913 = 3011485101 (1.130)4 (0.050) 4/234 NT 4.0% coding (25/933 nt) yqeA putative amino acid kinase
?NC_000913 = 3011501 98 (1.150)coding (41/933 nt) yqeA putative amino acid kinase