mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.7% | 73.9 / 58.0 | 86 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 71 (1.110) | 7 (0.140) +28 bp |
5/228 | 7.3 | 17.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097456 = | 9 (0.140) | intergenic (+627/+109) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 71 (1.110) | 7 (0.140) +28 bp |
5/228 | 7.3 | 17.4% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097275 = | 12 (0.190) | intergenic (+446/+290) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 71 (1.110) | 7 (0.140) +28 bp |
5/228 | 7.3 | 14.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097094 = | 36 (0.560) | intergenic (+265/+471) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 668251 | 57 (0.890) | 5 (0.080) | 5/266 | 8.4 | 8.5% | coding (465/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 668256 | 54 (0.900) | coding (460/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 1856323 = | 68 (1.070) | 4 (0.070) | 4/264 | 8.9 | 6.2% | coding (606/948 nt) | ydjH | putative kinase |
| ? | NC_000913 | 1856345 = | 58 (0.980) | coding (584/948 nt) | ydjH | putative kinase | |||||
| * | ? | NC_000913 | = 2243921 | 64 (1.000) | 4 (0.060) | 4/274 | 9.2 | 6.1% | coding (12/837 nt) | yeiG | S‑formylglutathione hydrolase |
| ? | NC_000913 | = 2243924 | 62 (1.010) | coding (15/837 nt) | yeiG | S‑formylglutathione hydrolase | |||||
| * | ? | NC_000913 | = 1592576 | 63 (0.990) | 3 (0.050) | 3/248 | 9.2 | 5.2% | intergenic (‑134/+89) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | NC_000913 | = 1592558 | 55 (0.990) | intergenic (‑116/+107) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
| * | ? | NC_000913 | = 4383657 | 79 (1.240) | 4 (0.070) | 3/266 | 9.7 | 5.2% | intergenic (+37/‑182) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter |
| ? | NC_000913 | = 4383664 | 73 (1.220) | intergenic (+44/‑175) | epmA/yjeM | Elongation Factor P Lys34 lysyltransferase/putative transporter | |||||
| * | ? | NC_000913 | 4094541 = | 66 (1.030) | 3 (0.050) | 3/270 | 9.8 | 4.6% | noncoding (226/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094573 = | 62 (1.020) | noncoding (258/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4094357 = | NA (NA) | 3 (0.050) | 3/270 | 9.8 | 4.5% | noncoding (42/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094573 = | 63 (1.040) | noncoding (258/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||